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Tetrahedral and Polyhedral Mesh Evaluation for Cerebral Hemodynamic Simulation - a Comparison

Authors:
  • Siemens Healthare GmbH

Abstract

Computational fluid dynamic (CFD) based on patient-specific medical imaging data has found widespread use for visualizing and quantifying hemodynamics in cerebrovascular disease such as cerebral aneurysms or stenotic vessels. This paper focuses on optimizing mesh parameters for CFD simulation of cerebral aneurysms. Valid blood flow simulations strongly depend on the mesh quality. Meshes with a coarse spatial resolution may lead to an inaccurate flow pattern. Meshes with a large number of elements will result in unnecessarily high computation time which is undesirable should CFD be used for planning in the interventional setting. Most CFD simulations reported for these vascular pathologies have used tetrahedral meshes. We illustrate the use of polyhedral volume elements in comparison to tetrahedral meshing on two different geometries, a sidewall aneurysm of the internal carotid artery and a basilar bifurcation aneurysm. The spatial mesh resolution ranges between 5,119 and 228,118 volume elements. The evaluation of the different meshes was based on the wall shear stress previously identified as a one possible parameter for assessing aneurysm growth. Polyhedral meshes showed better accuracy, lower memory demand, shorter computational speed and faster convergence behavior (on average 369 iterations less).
Tetrahedraland PolyhedralMesh EvaluationforCerebral
HemodynamicSimulation-aComparison
MartinSpiegel,ThomasRedel,Y.JonathanZhang,TobiasStruffert,JoachimHornegger,
RobertG.Grossman,Arnd Doerflerand ChristofKarmonik
AbstractComputationalfluid dynamic (CFD)basedon
patient-specificmedicalimagingdatahasfound widespread use
forvisualizing and quantifyinghemodynamicsin cerebrovas-
culardiseasesuchascerebralaneurysmsorstenotic vessels.
This paper focusesonoptimizingmesh parametersforCFD
simulationofcerebralaneurysms.Valid blood owsimulations
strongly depend onthemesh quality.Mesheswithacoarse
spatialresolutionmay leadto aninaccurateowpattern.
Mesheswithalargenumber ofelementswill result in un-
necessarily highcomputationtimewhichis undesirable should
CFDbeusedforplanningin theinterventionalsetting.Most
CFDsimulationsreportedforthesevascularpathologieshave
usedtetrahedralmeshes.Weillustratetheuseofpolyhedral
volume elementsin comparisontotetrahedralmeshing ontwo
differentgeometries,asidewall aneurysmof theinternalcarotid
artery and abasilarbifurcationaneurysm.Thespatialmesh
resolutionrangesbetween5,119 and 228,118 volume elements.
The evaluationof thedifferentmesheswasbasedonthewall
shearstress previously identifiedasa onepossible parameter for
assessing aneurysmgrowth.Polyhedralmeshes showed better
accuracy,lower memorydemand,shorter computationalspeed
and faster convergence behavior(onaverage369 iterationsless).
I.INTRODUCTION
Advancesin hardware and softwarehave enabledthe
application ofCFDin variousclinicalelds,e.g.cardiology
[1]orneuroradiology [2].Differentaspectshavebeenana-
lyzedlikepatient-specichemodynamicsimulation [3],[4],
correlation ofwall shearstress (WSS)patternwiththerisk
of ruptureofcerebralaneurysms[5],[6]orhemodynamic
characteristicspertaining tothe angleofthe aneurysmbulb
relativetotheparentartery[7].OtherCFDstudiesconsid-
eredthegeometricfactorsofaneurysms[8],[9],[10],e.g.
lesion size oraspectratiotoassess therisk ofananeurysm
M.Spiegel iswithFriedrich-AlexanderUniversityErlangen-Nuremberg
(FAU),DepartmentofComputerScience,ChairofPatternRecogni-
tion,Germany and FAU,DepartmentofNeuroradiology and Siemens
AG HealthcareSector,Forchheim, Germany and theErlangenGrad-
uateSchool inAdvancedOpticalTechnologies(SAOT),Germany
martin.spiegel@informatik.uni-erlangen.de
T.Redel iswithSiemensAG HealthcareSector,Forchheim, Germany
J.Zhang isaninterventionalneuroradiologistand vascularsurgeon with
TheMethodistHospital,Houston,TX,USA
T.Struffert isaninterventionalneuroradiologistwithFAU,Department
ofNeuroradiology,Erlangen,Germany
J.HorneggeriswithFAU,DepartmentofComputerScience,Chairof
PatternRecognition (Head)and SAOT,Erlangen,Germany
RG GrossmanisChairman oftheDepartmentofNeurosurgeryand
DirectoroftheNeurologicalInsitute,TheMethodistHospital,Houston,
TX USA
A.DoereriswithFAU,DepartmentofNeuroradiology (Head),Erlan-
gen,Germany
C.KarmonikisaResearchScientistwithTheMethodistHospital
ResearchInstitute,Houston,TX,USAckarmonik@tmhs.org
rupture.In[11],different inowconditionswereinvestigated
toassess itsdependence totheWSSdistribution inthe
vicinity ofthree basilartipaneurysms.WSSpatternsplaya
major roleforassessing pathologicalvesselsystemswithin
theCFDblood owcommunity.
Mostofthesesimulationsutilizedtetrahedralmeshes.More
advancedmeshing techniquesarenowavailableinturn-key
commercialCFDsoftwarepackageswhichmayleadtoare-
duction incomputing timeby reducing theoverall numberof
volume elementswhilemaintaining accuracy.While accurate
meshing isessential to obtainmesh-independentresults,ade-
ciencyinthemeshmay notbeobviousand mayleadto non-
validresultsasotherincorrectsimulation parameters,such
asimproperinletconditionsintermsofmass orblood ow
speed,varying blood densityand viscosity,blood modeledas
Newtonianuid.Mesh decienciesinclude cellswith high
skewness factorand a coarsespatialresolution thatmaylead
toimprecision computation oflocalvelocity orWSSpattern.
While assessmentofthemesh qualityistime-consuming,it is
nevertheless averyimportant task.Two distinctapproaches
formeshsuitability verication havebeenintroduced[12]:
1)Comparison ofthenumericalsimulation resultswith
experimentaldata and 2)generation ofasetofmeshes
withincreasing numberofcontrolelementsalsocalledmesh
independence analysis.Phase-contrastMRImeasurements
deliversuitableresultstocompareMRvelocity valuesorpri-
mary blood owpatternswithCFDsimulation results[13].
Meshindependence analysisisconsideredthe established
method forverifying meshaccuracytosimulate arterialow.
Itrequiresasetup ofdifferentmeshespervesselgeometry
fromlowto high resolution.
Thegoalofthis study wastoexploreintheframework of
meshindependence analysiswhetherpolyhedralmesheswith
fewervolume elementsthancomparabletetrahedralmeshes
will result in betteraccuracywithshortercomputation time
using patient-specicimaging data.Twocerebralaneurysm
geometrieswereinvestigated:oneinternalcarotidand one
basilartipaneurysm,respectively(see Fig.1).Asetof
varying meshresolutionswas systematicallycreatedasa
benchmarkforspatialmeshresolutionsneededto obtain
accurate,mesh-independentWSSpatternsorblood ow
velocity.
II.METHODS
3-Ddigitalsubtraction angiography (DSA)imagedata
[14]ofthetwocerebralaneurysms(see Fig.1)were ac-
quired during endovascularinterventionsusing abiplane
2787
31st Annual International Conference of the IEEE EMBS
Minneapolis, Minnesota, USA, September 2-6, 2009
978-1-4244-3296-7/09/$25.00 ©2009 IEEE
TABLE I
SET OFMESHES-CASE1AND CASE2.TE T.AND POLY.ABBREVIATE TETRAH EDRALAND POLYHEDRALRES PECTIVELY.PA AND ITE R.DENOT E
PASCALAND ITERATION S.
#Tet.CellsAngleGrowthMax./Min.TriangleTet.#Iter.#Poly.CellsPoly.#Iter.Tet.WSS(Pa)Poly.WSS(Pa)
Case1 13841 25 1.2 6 /0.001 153 5119 63 9.52 10.33
26702 14 1.2 3.6/0.001 180 7283 81 11.66 11.88
52374 14 1.1 1.8/0.001 296 12467 108 13.37 13.15
76493 6 1.2 1.2/0.001 306 17695 122 14.53 13.80
86621 12 1.1 0.4/0.001 1633 18681 142 14.43 13.92
106010 12 1.1 0.36 /0.001 1291 22297 185 14.76 13.99
115014 10 1.1 0.3/0.001 451 25540 154 14.71 14.32
228118 10 1.1 0.25 /0.001 -43487 583 -15.58
Case2 31696 17 1.2 0.42 /0.001 242 8814 111 5.91 5.26
43063 17 1.17 0.37 /0.001 378 10843 176 7.18 6.20
56176 15 1.12 0.34 /0.001 365 13280 185 7.06 6.51
75469 13 1.10 0.32 /0.001 437 16795 202 7.33 6.84
98399 10 1.10 0.3/0.001 462 21108 211 7.43 7.15
114227 10 1.10 0.28 /0.001 496 23846 230 7.47 7.23
148625 8 1.09 0.25 /0.001 714 30167 269 7.62 7.45
174225 6 1.10 0.24 /0.001 626 35665 254 7.48 7.57
(a) (b)
Fig.1.Three dimensionalreconstruction ofthe evaluatedaneurysms:(a)
Case1 depictsainternalcarotidaneurysm(b)Case2illustratesabasilartip
aneurysm
at-panelsystemSiemensC-ArmSystem(dBA,Siemens
AG HealthcareSector) inErlangen(Germany)and Houston
(USA).3-Dimagereconstructionsofbothaneurysmsledto
animagevolumeforCase1 of138.24×138.24×57.72mm
withavoxelspacing of0.27×0.27×0.13mm and forCase2
97.28×97.26×66.43mm (voxelspacing 0.19×0.19×0.1mm)
respectively.Formesh generation and smoothing,theMarch-
ing Cubes[15]and aLaplacian-basedsmoothing algorithm
(VTK KitwareInc.)wasappliedasanaddtionalstep.The
imagedatawas storedasastereolithographicle(STL)pro-
viding theinputdataforthe commercialmeshing software
GAMBIT(ANSYSInc.).
TheGAMBITcurvaturesize function [16]wasusedtoeasily
generatedifferentsurface meshesexhibiting agranularity
fromcoarsetone.Thisfunction constrainsthe anglebe-
tween outward-pointing normalsforany twoadjacentsurface
triangles.That isparticularly useful inthe caseofhighly
curvedsurfaceslike aneurysmgeometries.Hence,regions
with high curvature aremeshedinmoredetail thanthose
withlowercurvature.Fourparametersdenethe curvature
size function i.e.anglein degree,growthin percentage,max.
and min.trianglesize.TableIcontainsadetailed overview
ofthe appliedcurvaturesize function parameters.Givena
certain geometryand certain parametervalues,themeshing
algorithmwill automaticallychoosethenalnumberof
trianglesforthesurface mesh.
Thenumberoftetrahedralmeshelementsforthewhole
volumedependson theresolution ofthegivensurface mesh
-thelargerthenumberoftriangles,representing thesurface,
thelargerthenumberoftetrahedralmeshelements.
Mesheswereimportedintothesimulation softwareFluent
(ANSYSInc.).Foreachtetrahedralmesha corresponding
polyhedralmeshwasgenerated by a conversion algorithm
partoftheFluentCFDsolver.Thesurface ofthe aneurysm
and theparentarteryweremodeledasrigid-wallsand no
slipas shearcondition.Blood wasmodeledasanincom-
pressibleNewtonianuidwithadensity of1050kg/m3and
aviscosity of0.004 N/m2s[17].Theboundaryconditions
forall conductedsimulationswere asfollows: theinletwas
consideredasavelocityinletand all outletsweremodeled
aspressureoutletzero.Aconstant inowrateof0.5m/s
wasappliedinthesteady simulations.We considereda
steady-statesimulation asconverged,iftherelativeresiduals
fallsunder0.001 (i.e.the absolutevaluesoftheresiduals
werereduced by three ordersofmagnitude).Aseriesof
steady-statesimulationswereperformedaccording tothe
meshes shownintableIin ordertoeliminatetheissueof
unsuitableCFDmeshesand tocomparetheresultsgiven
frompolyhedraland tetrahedralmeshes.Figure2 gives
an overviewabout thesimulation resultsconcerning WSS
distribution.TheArea-Weighted-AverageWSSdistribution
wasusedtoanalyze theWSSdifferencesbetween polyhedral
and tetrahedralmeshesintermsofnumbers.It isdenedas
1
AZφdA=
1
A
n
X
i=1
φi|Ai|(1)
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whereAdenotesthetotalarea being consideredand φi
describesthewall shearstress associatedwiththefacetarea
Ai.
III.RESULTS
Thesimulation series showstwondings.1)theWSS
pattern ofpolyhedralmesheslook morehomogeneousthan
theonesofthetetrahedralmeshesasindicated by theyellow
circlesingure2.TableI (columns9and 10)depictstheval-
uesofthe averageArea-Weighted-AverageWSSdistribution
considering onlythe aneurysmarea asillustratedingure
2.Thedifferencesbetween bothmeshtypesarenegligible
considering thefact thatpolyhedralmeshesexhibit farless
cell elementsthantetrahedralmeshes.2)tetrahedralmeshes
exhibit afarworse convergence asthepolyhedralones(see
tableIcolumn 6 and 8).Onaverage,tetrahedralmeshes
need 369 iterationsmorethanthepolyhedralmeshes.The
highestresolvedtetrahedralmesh(case1 228118 tetrahedral
elements)did notconverge according tothe applied boundary
condition asdescribedinthemethod section.
IV.DISCUS SIO N
Acertainmeshresolution isneededtoresolvetheWSS
distribution on avalid base.TheWSSpatternis similar for
tetrahedral(whenconverged)and polyhedral.However,it
changeswithincreasing spatialresolution and convergesat
a certainlevel(see gure2and tableI).Polyhedralmeshes
can be consideredasaviable alternativetotetrahedral
meshesbecausethey do notonlyshowbettercomputational
convergence [18].Theyare alsoabletoresolvetheWSS
patternwithfarless controlvolumespermeshinamoreho-
mogeneousmannerthanthetetrahedralmeshes.Thereason
forthisliesinthewaytheWSSmagnitudeiscalculated
which dependson twomajoraspects:1)onlythose cell
elementsare consideredwhichactuallyshare a face with
thevesselboundary.Notall tetrahedralelementslocatedat
thevesselboundarysharenecessarilyanentireface withthe
boundary-somemaytouchtheboundarywithitscorner.
While all polyhedralelementslocatedat thewall share an
entireface withtheboundaryitself.2)Thedistancesofthe
consideredtetrahedralcentersarenotequal tothevesselwall
leading toamoreinhomogeneousWSSappearance.
Froma clinicalperspective,the convergence aswell asthe
computation speed ofCFDsimulationsare crucialaspects
regarding future clinicalCFD-based diagnostic and treatment
tools.It isnotfeasibleforthetreating physicianto have
tochangesimulation parametersto optimize convergence
behavior.Ourevaluation has shownthat thepolyhedral-based
meshesaremorestable and fasterand should beusedina
futurestandardizedclinicalsimulation workow.
Theresultsobtained during this study may be affected
duetoseveral limitations.Ourassumptionsconcerning the
conductedCFDexperimentsdiffer fromtheinvivostatein
termsof rigid vesselwalls,Newtonian-based blood uidand
thedetermination oftheboundaryconditions,respectively.
Theoutowsofthepatient-specicmodelsaredenedas
pressureoutletzerowhich doesnothavetomatchwiththe
realenvironment.Theremightbenaturalresistancesat the
outows.Aswith othercomputationalstudies,it isassumed
that theselimitationshaveonlyminoreffectson theresulting
owpattern[19].However,futurework hastofocuson the
reduction oftheselimitation inthesenseofvalidation against
invivomeasurements.
V.CO NCLUSIO N
This study representstherstmeshindependencyanalysis
intheeld ofcerebralblood owsimulation togetherwith
a comparison ofpolyhedraland tetrahedral-basedmeshes.
Here,weput thefocusfromthe actualowpatternwithin
aneurysmsoritscorresponding WSSpatterntothe evaluation
oftheCFDmesh.Our resultsillustratetheimportance ofa
well-foundedmesh granularityevaluation beforestarting a
blood owsimulation in orderto getreliableblood ow
simulation resultstosupport the clinicaldecision making.
Thisapproachservesasarstkeysteptowardsafuture
clinicalCFDapplication wherethemesh generation process
hasto be automatedasmuchaspossible.Furthermore,
theresultswill allowto deviaterequirementsto geometric
modelaccuracyacquired by modernimaging methodsand
to optimize CFDcomputation timewithout loss ofaccuracy.
VI.ACKNOWLED GMENTS
The authorswouldliketothank Dr.RalfKroeger (ANSYS
Germany GmbH) forhisadvice and simulation support.
The authorsgratefullyacknowledgefunding oftheErlangen
GraduateSchool inAdvancedOpticalTechnologies(SAOT)
by theGermanNationalScience Foundation (DFG)inthe
framework ofthe excellence initiative.
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Case1
Polyhedral Tetrahedral
5119
18681
25540
13841
86621
115014
Case2
Polyhedral Tetrahedral
8814 31696
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35665 174225
0.0 Pascal 58.6 Pascal
0.0 Pascal 121.3 Pascal
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... It has been found that trimmer mesh requires less memory compared to polyhedral mesh on small gap overset problems (CD-Adapco 2015). The polyhedral mesh generating method was chosen for the rest of the system for smaller number of cells (CD-Adapco 2015), higher accuracy, and faster convergence (Spiegel et al. 2009). Local refinement was performed in disc rotation regions. ...
... Tetrahedral or polyhedral elements are commonly used to discretize the volume. 46 To accurately address high velocity radial gradients in the vicinity of the wall, and thus to accurately estimate the WSS, three to five layers of prismatic boundary layer elements are required in near-wall regions. 13,47,48 Unstructured meshes in the context of aneurysm flow modeling are commonly comprised of elements of 0.1-0.2 ...
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