Michael L. Berumen

King Abdullah University of Science and Technology | KAUST · Red Sea Research Center

The ecological success of shallow water corals hinges on their association with photosynthetic Symbiodiniaceae algae. This is affected by environmental drivers among which sea temperature is pivotal. In 2016, a prolonged heat wave challenged New Caledonia reefs triggering a severe bleaching event. Here, we tracked 72 coral colonies comprising two s...

Many shark populations are in decline around the world, with severe ecological and economic consequences. Fisheries management and marine protected areas (MPAs) have both been heralded as solutions. However, the effectiveness of MPAs alone is questionable, particularly for globally threatened sharks and rays (‘elasmobranchs’), with little known abo...

To achieve sustainable shark fisheries, it is key to understand not only the biological drivers and environmental consequences of overfishing, but also the social and economic drivers of fisher behavior. The extinction risk of sharks is highest in coastal tropical waters, where small‐scale fisheries are most prevalent. Small‐scale fisheries provide...

Understanding how mesopredators partition their diet and the identity of consumed prey can assist in understanding the ecological role predators and prey play in ecosystem trophodynamics. Here, we assessed the diet of three common coral reef mesopredators; Pseudochromis flavivertex , Pseudochromis fridmani , and Pseudochromis olivaceus from the fam...

In many tropical nations, coastal communities seek to manage their sea cucumber fisheries by establishing locally managed marine areas on their traditional fishing grounds. These managed areas can protect spawning stocks, however the extent to which they help to replenish nearby sea cucumber fisheries is debated, as nothing is known about the scale...

An essential component of the coral reef animal diversity is the species hidden in crevices within the reef matrix, referred to as the cryptobiome. These organisms play an important role in nutrient cycling and provide an abundant food source for higher trophic levels, yet they have been largely overlooked. Here, we analyzed the distribution patter...

Beneficial microorganisms for corals (BMCs), or probiotics, can enhance coral resilience against stressors in laboratory trials. However, the ability of probiotics to restructure the coral microbiome in situ is yet to be determined. As a first step to elucidate this, we inoculated putative probiotic bacteria (pBMCs) on healthy colonies of Pocillopo...

The Red Sea is a globally significant hotspot of coral reef biodiversity and one of the earliest study sites for modern reef research. Reef science in this basin has been summarized in three review papers, each covering different aspects of the available research in broad terms. To build on these earlier works, greatly expanding both the library of...

Despite being subject to intensive research and public interest many populations of dolphins, porpoises, and other toothed whales (small cetaceans) continue to decline, and several species are on the verge of extinction. We examine small cetacean status, human activities driving extinction risk, and whether research efforts are addressing priority...

Cryptobenthic reef fshes (CRFs) are often neglected in reef biodiversity assessments, trophodynamic studies, and biomass models. Tis oversight is due to the challenges associated with recording them in traditional underwater visual surveys and the scarcity of literature detailing their life history, ecology, and body growth parameters. Given their...

Globally, groupers (Serranidae) are commercially important fish species. Hybridization within this family has been reported in captivity and natural environments, usually among congeneric species. However, intergeneric hybridization has been reported only occasionally. Given the commercial interest in these fish, artisanal or recreational fishermen...

The mutualism between clownfishes (or anemonefishes) and their giant host sea anemones are among the most immediately recognizable animal interactions on the planet and have attracted a great deal of popular and scientific attention. However, our evolutionary understanding of this iconic symbiosis comes almost entirely from studies on clownfishes-...

The coastal waters of the Arabian Peninsula include a heterogeneous marine region comprising the Persian/Arabian Gulf and Sea of Oman at its northeastern boundary and the Arabian Sea, Gulf of Aden, and Red Sea at its southern and western boundary. The environment within this region shifts from highly variable coral cover and extreme temperatures wi...

Many predator species make regular excursions from near-surface waters to the twilight (200 to 1,000 m) and midnight (1,000 to 3,000 m) zones of the deep pelagic ocean. While the occurrence of significant vertical movements into the deep ocean has evolved independently across taxonomic groups, the functional role(s) and ecological significance of t...

Beneficial Microorganisms for Corals (BMCs), or probiotics, enhance coral resilience against stressors in laboratory trials, being the only sustainable treatment currently explored to retain threatened native corals. However, the ability of probiotics to restructure the coral microbiome in situ is yet to be determined. To elucidate this, we inocula...

Damselfishes (family Pomacentridae) are widely distributed reef-associated marine fishes. The family’s diversity, iconic nesting behaviors, and high environmental adaptability contribute to the popularity of damselfishes as aquarium species, tourist attractions, and model scientific study organisms. In the present study, we conducted a series of in...

Despite being subject to intensive research and public interest populations of dolphins, porpoises, and other toothed whales continue to decline, and several species are on the verge of extinction. We examine small cetacean status, human activities driving extinction risk, and whether research efforts are addressing priority threats. We estimate th...

Managing marine nonindigenous species (mNIS) is challenging, because marine environments are highly connected, allowing the dispersal of species across large spatial scales, including geopolitical borders. Cross-border inconsistencies in biosecurity management can promote the spread of mNIS across geopolitical borders, and incursions often go unnot...

Sea turtles are migratory with nesting and foraging areas in distinct and often widely separated habitats. Telemetry has been a vital tool for tracking sea turtle migrations between these areas, but tagging efforts are often focused on only a few large rookeries in a given region. For instance, turtle tagging in the Red Sea has been focused in the...

Temporal patterns in spawning and juvenile recruitment can have major effects on population size and the demographic structure of coral reef fishes. For harvested species, these patterns are crucial in determining stock size and optimizing management strategies such as seasonal closures. For the commercially important coral grouper (Plectropomus sp...

Monitoring animal behavior can facilitate conservation efforts by providing key insights into wildlife health, population status, and ecosystem function. Automatic recognition of animals and their behaviors is critical for capitalizing on the large unlabeled datasets generated by modern video devices and for accelerating monitoring efforts at scale...

Marine vegetated habitats such as seagrass, mangroves, and macroalgae are common along tropical coastlines globally and provide habitats for a diversity of fishes, including juvenile fish and species found on coral reefs. Understanding the use of these habitats by different fish species and life stages is fundamental to spatial planning, fisheries...

The ability to identify individual animals can provide valuable insights into the behaviour, life history, survivorship, and demographics of wild populations. Photo-identification (photo-ID) uses unique natural markings to identify individuals and can be effective for scalable and non-invasive research on marine fauna. The successful application of...

The Mediterranean monk seal Monachus monachus is considered one of the most endangered species of marine mammal globally. The Madeira archipelago (NE Atlantic) represents the last refuge of M. monachus in the European Atlantic, with only 20 individuals thought to remain. Prey availability has been identified as one of the main concerns regarding th...

The family Euphylliidae consists of reef-building zooxanthellate scleractinian corals distributed across the Indo-Pacific. Seven extant genera comprising a total of 22 valid species are currently recognised. Recent studies have re-organised the taxonomy of the family at the genus level based on molecular and morphological data, including a comprehe...

Biodiversity inventories and monitoring techniques for marine fishes often overlook small (<5 cm), bottom‐associated (‘cryptobenthic’) fishes, and few standardized, comparative assessments of cryptobenthic fish communities exist. We sought to develop a standardized, quantitative survey method for cryptobenthic fishes that permits their sampling acr...

Macroalgae canopies are common in tropical coastlines, and can be feeding grounds for coral reef fishes. We investigated whether fish transfer algal material from Sargassum-dominated macroalgae habitats to coral reefs by collecting gut contents of two herbivorous fish species (Naso elegans and N. unicornis) from coral reefs in the central Red Sea....

(1) Background: Plastic pollution is a major environmental concern confronting marine animals. Sea turtles are considered a bio-indicator of plastic pollution, but there is little information regarding plastic ingestion by turtles in the Red Sea. With large-scale development projects being built along the Saudi Arabian coast, it is important to hav...

Background Hawksbill turtles ( Eretmochelys imbricata ) are Critically Endangered throughout their global range, and concerningly little is known about this species in the Red Sea. With large-scale coastal development projects underway in the northern Red Sea, it is critical to understand the movement and habitat use patterns of hawksbill turtles i...

In November 2020, we observed several individuals and collected one juvenile of an unidentified anthiadine fish (Serranidae) between depths of 250 and 307 m near vertical walls of rocky reefs in the northern Red Sea. Further morphological and molecular analyses revealed that the collected specimen matches Sacura boulengeri, a species previously rep...

This report provides the first confirmed identifications of wahoo ( Acanthocybium solandri ) and striped marlin ( Kajikia audax ) in the Red Sea, expanding the known ranges of these species into the basin. Potential mechanisms responsible for the lack of regional documentation of the two species are further discussed. These findings illustrate the...

Aim Several marine biogeographical provinces meet at the Arabian Peninsula. Where and how these junctions affect species is poorly understood. We herein aimed to identify the barriers to dispersal and how these shape fish populations, leading to differing biogeographies despite shared habitat and co‐ancestry. Taxon Dascyllus marginatus (endemic) a...

Marine vegetated habitats such as seagrass, mangroves, and macroalgae are common in tropical coastlines globally, providing habitats for a diversity of organisms. Many tropical fish use these habitats, including juvenile fish and species found on coral reefs. Understanding the use of these habitats by different fish species and life stages is funda...

Ocean warming is leading to more frequent coral bleaching events. However, cold stress can also induce bleaching in corals. Here, we report observations of a boreal winter bleaching event in January 2020 in the central Red Sea, mainly within a popu- lation of the branching coral Stylophora pistillata on an offshore reef flat. Sea surface temperatur...

The combination of molecular tools, standard surveying techniques, and long-term monitoring programs are relevant to understanding environmental and ecological changes in coral reef communities. Here we studied temporal variability in cryptobenthic coral reef communities across the continental shelf in the central Red Sea spanning 6 years (three sa...

Social hierarchies within groups define the distribution of resources and provide benefits that support the collective group or favor dominant members. The progression of individuals through social hierarchies is a valuable characteristic for quantifying population dynamics. On coral reefs, some clownfish maintain size-based hierarchical communitie...

The Red Sea is particularly biodiverse, hosting high levels of endemism and numerous populations whose extinction risk is heightened by their relative isolation. Elasmobranchs and sea turtles have likely suffered recent declines in this region, although data on their distribution and biology are severely lacking, especially on the eastern side of t...

Understanding species-specific resource requirements is paramount in managing and protecting biodiversity in a world where environmental quality is in decline. Dietary data can inform predator–prey relationships and how changes in prey availability impact different species. However, for many coral reef fishes, prey and predatory events can be diffi...

Despite the large size and economic value of the species, populations of oceanic manta ray ( Mobula birostris ) are often poorly studied and almost completely undescribed in the Red Sea. Here, photo‐identification (photo‐ID) was used to provide the first description of M. birostris movement patterns and population demographics for the northern Red...

Background Anthropogenic sources can lead to the accumulation of heavy metals in marine organisms through ingestion, absorption, or inhalation. For sea turtle embryos, heavy metals can be absorbed into the egg from the incubation environment or be maternally transferred to the offspring causing neurological, reproductive, and developmental problems...

Demographic analyses offer insight into the state of a population. Here, we surveyed different reef flat zones (exposed, midreef and sheltered) of six reefs over a cross-shelf gradient to characterize the population structure of Stylophora pistillata, a coral species which dominates reef flats in the central Red Sea. Phototransects were conducted a...

A new species of sparid fish, Acanthopagrus oconnorae, is described based on 11 specimens collected in the shallow (0–1 m depth) mangrove‐adjacent sandflats of Thuwal, Saudi Arabia. The new species is distinguished from its congeners by the following combination of characters: second anal‐fin spine 12.8%–16.6% of standard length (SL); 3½ scale rows...

Background There is relatively little published information about sea turtle nesting distribution and seasonality in the Saudi Arabian Red Sea. Upcoming large-scale developments occurring along the Saudi Arabian Red Sea coast could negatively affect many sea turtle nesting beaches with potential impacts on the survival of local populations. Method...

Scleractinian corals provide habitats for a broad variety of cryptofauna, which in turn may contribute to the overall functioning of coral symbiomes. Among these invertebrates, hydrozoans belonging to the genus Zanclea represent an increasingly known and ecologically important group of coral symbionts. In this study, we analysed 321 Zanclea colonie...

Effective conservation strategies are founded by baseline information on abundance and diversity estimates. Method choice can influence the success of baseline surveys as method performance is variable and needs to be selected based on habitat and taxa. Here, we assess the suitability of unoccupied aerial vehicle (UAV) surveys, specifically multi-r...

Merten’s carpet sea anemone, Stichodactyla mertensii Brandt, 1835, is the largest known sea anemone species in the world, regularly exceeding one meter in oral disc diameter. A tropical species from the Indo-Pacific, S. mertensii drapes prominently over coral reef substrates and is a common host to numerous species of clownfishes and other symbiont...

Significance Global vessel traffic is increasing alongside world economic growth. The potential for rising lethal ship strikes on endangered species of marine megafauna, such as the plankton-feeding whale shark, remains poorly understood since areas of highest overlap are seldom determined across an entire species range. Here we show how satellite...

We observed groupers with an unusual color pattern in Ghoubet-Al-Kharab Bay, Djibouti, on two occasions in 2014 and 2020. It matches the field observation of a juvenile Cephalopholis formosa in India in 1980. If this is the case, our observation represents a major range extension for C. formosa . Alternatively, based on the intermediate coloration...

Merten’s carpet sea anemone, Stichodactyla mertensii , is the largest known sea anemone species in the world, regularly exceeding one meter in oral disc diameter. A tropical species from the Indo-Pacific, S. mertensii drapes prominently over coral reef substrates and is a common host to numerous species of clownfishes and other symbionts throughout...

Many large marine species are vulnerable to anthropogenic pressures, and substantial declines have been documented across a range of taxa. Many of these species are also long-lived, have low individual resighting rates and high levels of individual heterogeneity in capture probability, which complicates assessments of their conservation status with...

The whale shark Rhincodon typus is found throughout the world's tropical and warm-temperate ocean basins. Despite their broad physical distribution, research on the species has been concentrated at a few aggregation sites. Comparing DNA sequences from sharks at different sites can provide a demographically neutral understanding of the whale shark's...

Timing and location of transient reef fish spawning aggregations are fundamental data required to effectively manage populations, particularly those exposed to commercial fisheries. The giant trevally ( Caranx ignobilis ) is a semipelagic apex predator of ecological, economic, and cultural significance across its Indo-Pacific range, yet information...

Monitoring and detecting fish behaviors provide essential information on fish welfare and contribute to achieving intelligent production in global aquaculture. This work proposes an efficient approach to analyze the spatial distribution status and motion patterns of juvenile clownfish (Amphiprion bicinctus) maintained in aquaria at three stocking d...

Background The Red Sea contains thousands of kilometers of fringing reef systems inhabited by clownfish and sea anemones, yet there is no consensus regarding the diversity of host anemone species that inhabit this region. We sought to clarify a historical record and recent literature sources that disagree on the diversity of host anemone species in...

This paper studies fish growth trajectory tracking using Q-learning under a representative bioenergetic growth model of Nile tilapia (Oreochromis niloticus). The fish growth rate varies in practice and cannot be easily estimated due to the complex aquaculture condition and variable environmental factors. Additionally, the growth trajectory tracking...

An integrated approach using morphological and genetic data is needed to disentangle taxonomic uncertainties affecting the hydrozoan families Sphaerocorynidae and Zancleopsidae. Here we used this approach to accurately characterise species in these families, identify the previously unknown polyp stages of the genera Euphysilla and Zancleopsis, whic...

Early research into coral reproductive biology suggested that spawning synchrony was driven by variations in the amplitude of environmental variables that are correlated with latitude, with synchrony predicted to break down at lower latitudes. More recent research has revealed that synchronous spawning, both within and among species, is a feature o...

Symbiotic relationships contribute considerably to the high biodiversity found on coral reefs. Coral-dwelling gall crabs (Cryptochiridae) represent a prime example of coral-associated invertebrates that exhibit obligate relationships with their host. The induction of a skeletal modification in the coral, used as a dwelling by the crab, is the most...

Understanding larval connectivity patterns in exploited fishes is a fundamental prerequisite for developing effective management strategies and assessing the vulnerability of a fishery to recruitment overfishing and localised extinction. To date, however, researchers have not considered how regional variations in fishing pressure also influence rec...

Environmental DNA (eDNA) is increasingly being used to assess community composition in marine ecosystems. Applying eDNA approaches across broad spatial scales now provide the potential to inform biogeographic analyses. However, to date, few studies have employed this technique to assess broad biogeographic patterns across multiple taxonomic groups....

The Arabian pupfish, Aphanius dispar , is a euryhaline fish inhabiting both inland nearly-freshwater desert ponds and highly saline Red Sea coastal lagoons of the Arabian Peninsula. Desert ponds and coastal lagoons, located respectively upstream and at the mouths of dry riverbeds (“wadies”), have been found to potentially become connected during pe...

In precision aquaculture, the primary goal is to maximize biomass production while minimizing production costs. This objective can be achieved by optimizing factors that have a strong influence on fish growth, such as feeding rate, temperature, and dissolved oxygen. This paper provides a comparative study of four model predictive control (MPC) stra...

Social hierarchies within groups define the distribution of resources and provide benefits that support the collective group or favor dominant members. The progression of individuals through social hierarchies is a valuable characteristic for quantifying population dynamics. On coral reefs, a number of small site-attached fish maintain size-based h...

Determining how growth rates and body size vary spatially and among reef fish species is important to understanding functional traits and demographic trade-offs. Variability in reef fish growth trajectories may be influenced by intrinsic (e.g., biological, phylogenetic) and extrinsic factors (e.g., environmental), as well as their interaction via e...