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Contribution of chemical changes in membrane lipids to the osmoadaptation of the halophilic bacterium Chromohalobacter salexigens

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The long-term response of the broad-salt growing halophile Chromohalobacter salexigens DSM 3043T to salt stress has been investigated with respect to adaptive changes in membrane lipid composition. This study included the wild-type and three salt-sensitive, ectoine-deficient strains: CHR62 (ectA::Tn1732, unable to grow above 0.75 M NaCl), CHR63 (ectC::Tn1732, unable to grow above 1.5 M NaCl), and CHR64, which was able to grow in minimal medium M63 up to 2.5 M NaCl, but its growth was slower than the wild-type strain at salinities above 1.5 M NaCl. This mutant accumulated ectoine and hydroxyectoine as major compatible solutes, but also the ectoine precursor, N-gamma-acetyldiaminobutyric acid, and was found to be affected in the ectoine synthase gene ectC. The main phospholipids of the wild-type strain were phosphatidylethanolamine, phosphatidylglycerol (PG), and cardiolipin (CL). Major fatty acids were detected as 16:0, 18:1, and 16:1, including significant amounts of cyc-19:0, and cyc-17:0. CL and cyclopropane fatty acids (CFA) levels were elevated when the wild-type strain was grown at high salinity (2.5 M NaCl). Membranes of the most salt-sensitive trains CHR62 and CHR63, but not of the less salt-sensitive strain CHR64, contained lower levels of CL. The proportion of cyc-19:0 in CHR64 was three-fold (at 2.0M NaCl) and 2.5-fold (at 2.5 M NaCl) lower than that of the wild type, suggesting that this mutant has a limited capacity to incorporate CFA into phospholipids at high salt. The addition of 1 mM ectoine to cultures of the wild-type strain increased the ratio PG/CL from 1.8 to 3.3 at 0.75 M NaCl, and from 1 to 6.5 at 2.5 M NaCl, and led to a slight decrease in CFA content. Addition of 1 mM ectoine to the mutants restored the steady-state levels of CL and CFA found in the wild-type strain supplemented with ectoine. These findings suggest that exogenous ectoine might attenuate the osmostress response involving changes in membrane lipids.
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... Trehalose is also a compatible solute that can be synthesized by C. salexigens as a protectant against salinity and temperature (Reina-Bueno et al., 2012). Another adaptation strategy used by C. salexigens DSM 3043 to deal with varying salt concentrations is the chemical change in membrane lipids and fatty acid composition, increasing the levels of cardiolipin and converting unsaturated fatty acids to saturated cyclopropane fatty acids when growing at high salinity (Vargas et al., 2005). A similar behavior has been observed in a C. israelensis strain where the degree of unsaturation decreased in the presence of higher salinities (Mutnuri et al., 2005). ...
... The complete genomes of the type strains of five species of this genus are not available, and thus, it is not possible to determine the phylogenomic relationship of all members of this genus by comparison of their genomes. The chemotaxonomic features (cellular fatty acids) of some species also support their coherent genus status (Mutnuri et al., 2005;Vargas et al., 2005;Peçonek et al., 2006;Sánchez-Porro et al., 2007). ...
Chapter
Chro.mo.ha.lo.bac'ter. Gr. neut. n. chroma color; Gr. masc. n. hals halos the sea, salt; N.L. masc. n. bacter rod; N.L. masc. n. Chromohalobacter colored salt rod. Proteobacteria / Gammaproteobacteria / Oceanospirillales / Halomonadaceae / Chromohalobacter The genus Chromohalobacter is classified within the family Halomonadaceae and the order Oceanospirillales in the class Gammaproteobacteria. The cells are Gram‐stain‐negative, motile, and non‐endospore‐forming rods. Colonies are cream, yellow, white, brown, or black pigmented. Chemoorganotrophic. Strictly aerobic or facultatively anaerobic and catalase‐positive. Moderately halophilic. Optimal growth at 7.5–12.5% (w/v) NaCl, at pH 7.0–8.0 and 28–37°C. The predominant cellular fatty acids are C16:0, C19:0 cyclo ω8c, C18:1 ω7c, and C12:0 3‐OH. The predominant respiratory quinone is Q‐9. The DNA G + C content is 56.1–66.0 mol%. Currently, the genus includes eight species: Chromohalobacter marismortui (type species of the genus), Chromohalobacter beijerinckii, Chromohalobacter canadensis, Chromohalobacter israelensis, Chromohalobacter japonicus, Chromohalobacter nigrandesensis, Chromohalobacter salexigens, and Chromohalobacter sarecensis. The strains of these species were isolated from salt lakes, salterns, and other saline habitats or salted foods. DNA G + C content (mol%): 56.1–66.0. Type species: Chromohalobacter marismortui (ex Elazari‐Volcani 1940) Ventosa et al. 1989VP.
... A second, more accurate, strategy is to partially reformulate an experimentally-determined biomass composition by estimating the relative fraction of the biomass metabolites of the organism of interest that can be experimentally calculated. In this work, both biomass compositions were obtained by partially reformulating Escherichia coli biomass composition [25][26][27] by using previously published and experimental data from C. salexigens [7,24]. ...
... Appropriate amino acid molar ratio for both biomass reactions were calculated assuming that all proteins encoded by C. salexigens genome were expressed equally [26,28]. The proportion of total proteins in response to salinity was calculated based on previous results by our group [7] and the molar ratio of membrane phospholipids in response to salinity were previously determined by Vargas and co-workers [24]. The percentage of G+C in C. salexigens genome was experimentally estimated [1]. ...
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Background The halophilic bacterium Chromohalobacter salexigens is a natural producer of ectoines, compatible solutes with current and potential biotechnological applications. As production of ectoines is an osmoregulated process that draws away TCA intermediates, bacterial metabolism needs to be adapted to cope with salinity changes. To explore and use C. salexigens as cell factory for ectoine(s) production, a comprehensive knowledge at the systems level of its metabolism is essential. For this purpose, the construction of a robust and high-quality genome-based metabolic model of C. salexigens was approached. ResultsWe generated and validated a high quality genome-based C. salexigens metabolic model (iFP764). This comprised an exhaustive reconstruction process based on experimental information, analysis of genome sequence, manual re-annotation of metabolic genes, and in-depth refinement. The model included three compartments (periplasmic, cytoplasmic and external medium), and two salinity-specific biomass compositions, partially based on experimental results from C. salexigens. Using previous metabolic data as constraints, the metabolic model allowed us to simulate and analyse the metabolic osmoadaptation of C. salexigens under conditions for low and high production of ectoines. The iFP764 model was able to reproduce the major metabolic features of C. salexigens. Flux Balance Analysis (FBA) and Monte Carlo Random sampling analysis showed salinity-specific essential metabolic genes and different distribution of fluxes and variation in the patterns of correlation of reaction sets belonging to central C and N metabolism, in response to salinity. Some of them were related to bioenergetics or production of reducing equivalents, and probably related to demand for ectoines. Ectoines metabolic reactions were distributed according to its correlation in four modules. Interestingly, the four modules were independent both at low and high salinity conditions, as they did not correlate to each other, and they were not correlated with other subsystems. Conclusions Our validated model is one of the most complete curated networks of halophilic bacteria. It is a powerful tool to simulate and explore C. salexigens metabolism at low and high salinity conditions, driving to low and high production of ectoines. In addition, it can be useful to optimize the metabolism of other halophilic bacteria for metabolite production.
... Proper fluidity of the membrane is essential for the mobility and functionality of embedded proteins and lipids, diffusion of proteins and other molecules across the membrane, and the appropriate separation of membranes during cell division. It has been reported that bacterial membrane composition changes during acid shock (Chang and Cronan, 1999;Kim et al., 2005), osmolarity fluctuations (Vargas et al., 2005), freeze-drying (Muñoz- Rojas et al., 2006), and exposure to suboptimal growth temperatures (Guerzoni et al., 2001). ...
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Adhesion has been regarded as one of the basic features of probiotics. The aim of this study was to investigate the influence of acid stress on the functional properties, such as hydrophobicity, adhesion to HeLa cells, and composition of membrane fatty acids, of Lactobacillus probiotics strains. Two strains of Lacto-bacillus casei were used. Adhesion on polystyrene, hy-drophobicity, epithelial cells adhesion, and fatty acids analysis were evaluated. Our results showed that the membrane properties such as hydrophobicity and fatty acid composition of stressed strains were significantly changed with different pH values. However, we found that acid stress caused a change in the proportions of unsaturated and saturated fatty acid. The ratio of saturated fatty acid to unsaturated fatty acids observed in acid-stressed Lactobacillus casei cells was significantly higher than the ration in control cells. In addition, we observed a significant decrease in the adhesion ability of these strains to HeLa cells and to a polystyrene surface at low pH. The present finding could first add new insight about the acid stress adaptation and, thus, enable new strategies to be developed aimed at improving the industrial performance of this species under acid stress. Second, no relationship was observed between changes in membrane composition and fluidity induced by acid treatment and adhesion to biotic and abiotic surfaces. In fact, the decrease of cell surface hydrophobicity and the adhesion ability to abiotic surface and the increase of the capacity of adhesion to biotic surface demonstrate that adhesive characteristics will have little relevance in probiotic strain-screening procedures.
... The 15-methylpalmitic acid and 14-methylpalmitic acid are the iso-and ante-iso-branched fatty acids found in Grampositive bacteria (Oren 2012). From experiments on saltstress-effect on lipid composition of various haloalkaliphilic bacteria (Vargas et al. 2005b), it was found that the membrane fluidity between the environmental factors (temperature and pH) and cell response (phospholipids and fatty acids composition) play an important role. ...
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The haloalkaliphilics are an important subset of extremophiles that grow in salt [upto 33% (wt/vol) NaCl] and alkaline pH (> 9). They are found in hypersaline environments especially in the brines in arid, coastal and deep sea locations, and in alkaline environments, such as soda soils, lakes and deserts. Some authors have described haloalkaliphilic bacteria as moderate halophilic bacteria, but the molecular and classical studies revealed that they belong to moderately to extremely halophilic bacteria and archaea. Organic solutes, such as glycine, betaine and other amino acid derivatives, sugars such as, sucrose and trehalose, and sugar alcohols present in the haloalkaliphilics help for their osmoadaptation, and also serve as stabilizers. Haloalkalphilics secrete exoenzymes like proteases, amylases, xylanases, cellulases and peroxidases which have potential industrial applications. They also produce bacteriorhodopsin, compatible solutes, pigments, biopolymers, secondary metabolites like biosurfactants, polyhydroxyalkanoate (PHA) and exopolysaccharides and antimicrobial/anticancer compounds. They have unique metabolic pathways which can be used to treat industrial pollutants, heavy metals and waste water.
... In fact, proper fluidity of the membrane is essential for the mobility and functionality of embedded proteins and lipids, diffusion of proteins and other molecules across the membrane and the appropriate separation of membranes during cell division. It has been reported that bacterial membrane composition changes during acid shock (Chang and Cronan 1999;Kim et al. 2005), osmolarity fluctuations (Vargas et al. 2005), freeze-drying (Muñoz- Rojas et al. 2006), and exposure to suboptimal growth temperatures (Guerzoni et al. 2001). ...
... The bacterial response to salinity might include morphological, physiological and biochemical changes, and induced defensive mechanisms (Rothschild & Mancinelli, 2001;DasSarma &Aora, 2002 andLe Borgne et al., 2008). Different microorganisms have the ability to adapt or tolerate the salinity stress by many ways such accumulating osmolytes (Zahran et al., 1992 andSagot et al., 2010), amino acid substitutions (Lanyi, 1974) and cell membrane lipids modification (Kaneda, 1991 andVargas et al., 2005). Especially, an important adaptive response of bacterial cells to salt stress is that the modifications in their fatty acids and lipids (Ventosa et al., 1998;Nicolaus et al., 2001;Kaye &Baross, 2004 andDe Carvalho et al., 2014). ...
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Since salinity is one of the major abiotic stresses, bacteria totally have different adaptive or tolerant mechanisms that respond to salinity stress. Multiwavelength UV-Vis spectroscopy used to estimate the bacterial growth under different sodium chloride concentrations. Absorbance ratio of 280nm to 260nm (A280/A260) varied considerably according to the salt concentration. This showed some metabolic activity changes as a part of the adaptive response that allows Halomonas alkaliphila to face salinity stress changes. Here, adaptive changes of fatty-acid composition of H. alkaliphila YHSA35 because of different sodium chloride concentrations were determined. In this work, fatty acids methyl esters (FAME) composition analysis was achieved and estimated the presence of thirty-four fatty acids in H. alikaliphila YHSA35 cells. Quantitatively changes were found within the level of saturated fatty acids; Caproic, Lauric, Undecanoic, Myristic, Palmitic, Heptadecanoic and in unsaturated fatty acids; Oleic, cis-11- Eicosenoic, Erucic. In high salt concentration, unsaturated fatty acids synthesis rate is reduced, resulting in an accumulation of palmitic acid. In conclusion, levels of saturated fatty acid profile changed in H. alkaliphila YHSA35 because of salinity stress that may modulate the membrane lipid viciousness for adaptation and best cellular perform.
... Another common approach to modify the cardiolipin content is to culture bacteria under high salt concentrations or to add exogeneous cardiolipin during the bacterial growth. Increase in cardiolipin content under conditions of high salinity has been largely reported both in Gram-positive bacteria including B. subtilis 61,62 and S. aureus 63 and in Gram-negative bacteria including R. sphaeroides 64 , C. salexigens 65 , and E. coli 66 . Unfortunately these approaches also show drawbacks since increase in NaCl concentrations could affect the behavior of free and/or bound diNn to membrane components favoring aggregation in solution and/or proximity of bound diNn in the membrane, respectively. ...
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Some bacterial proteins involved in cell division and oxidative phosphorylation are tightly bound to cardiolipin. Cardiolipin is a non-bilayer anionic phospholipid found in bacterial inner membrane. It forms lipid microdomains located at the cell poles and division plane. Mechanisms by which microdomains are affected by membrane-acting antibiotics and the impact of these alterations on membrane properties and protein functions remain unclear. In this study, we demonstrated cardiolipin relocation and clustering as a result of exposure to a cardiolipin-acting amphiphilic aminoglycoside antibiotic, the 3′,6-dinonyl neamine. Changes in the biophysical properties of the bacterial membrane of P. aeruginosa, including decreased fluidity and increased permeability, were observed. Cardiolipin-interacting proteins and functions regulated by cardiolipin were impacted by the amphiphilic aminoglycoside as we demonstrated an inhibition of respiratory chain and changes in bacterial shape. The latter effect was characterized by the loss of bacterial rod shape through a decrease in length and increase in curvature. It resulted from the effect on MreB, a cardiolipin dependent cytoskeleton protein as well as a direct effect of 3′,6-dinonyl neamine on cardiolipin. These results shed light on how targeting cardiolipin microdomains may be of great interest for developing new antibacterial therapies.
... The phenomena that increasing the salt concentration in growth media may lead to a reduced inhibitory effect of some antibiotics to moderate halophiles had been reported previously Nieto et al. 1993), although the resistance mechanism was exactly unclear. There were some evidences indicated that several antibiotics could react with ions under high salinity, which may affect its permeability across the membrane (Piekarski et al. 2009), and the chemical changes in membrane lipids in response to the high salt concentration may alter the membrane permeability toward antibiotics (Ventosa and Nieto 2005). The resistance of C. salexigens ZW4-1 toward kanamycin will result in predominantly false positives clones following conjugation. ...
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... In fact, proper fluidity of the membrane is essential for the mobility and functionality of embedded proteins and lipids, diffusion of proteins and other molecules across the membrane and the appropriate separation of membranes during cell division. It has been reported that bacterial membrane composition changes during acid shock (Chang and Cronan 1999;Kim et al. 2005), osmolarity fluctuations (Vargas et al. 2005), freeze-drying (Muñoz- Rojas et al. 2006), and exposure to suboptimal growth temperatures (Guerzoni et al. 2001). ...
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Strain CHR63 is a salt-sensitive mutant of the moderately halophilic wild-type strain Halomonas elongata DSM 3043 that is affected in the ectoine synthase gene (ectC). This strain accumulates large amounts of N gamma-acetyldiaminobutyrate (NADA), the precursor of ectoine (D. Canovas, C. Vargas, F. Iglesias-Guerra, L. N. Csonka, D. Rhodes, A. Ventosa, and J. J. Nieto, J. Biol. Chem. 272:25794-23801, 1997). Hydroxyectoine, ectoine, and glucosylglycerate were also identified by nuclear magnetic resonance (NMR) as cytoplasmic organic solutes in this mutant. Accumulation of NADA, hydroxyectoine, and ectoine was osmoregulated, whereas the levels of glucosylglycerate decreased at higher salinities. The effect of the growth stage on the accumulation of solutes was also investigated. NADA was purified from strain CHR63 and was shown to protect the thermolabile enzyme rabbit muscle lactate dehydrogenase against thermal inactivation. The stabilizing effect of NADA was greater than the stabilizing effect of ectoine or potassium diaminobutyrate. A H-1 NMR analysis of the solutes accumulated by the wild-type strain and mutants CHR62 (ectA::Tn1732) and CHR63 (ectC::Tn1732) indicated that H. elongata can synthesize hydroxyectoine by two different pathways-directly from ectoine or via an alternative pathway that converts NADA into hydroxyectoine without the involvement of ectoine.
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Chapter
The Halomonadaceae (Franzmann et al., 1988) presently contains representatives of two genera, the type genus Halomonas and at least one species of the genus Deleya (D. aesta) (see Chapter 168). The establishment of the family was suggested because Sab values obtained from 16S rRNA catalogs show that Halomonas and Deleya are phylogenetically isolated from all other major groups of the gamma subdivision of the Proteobacteria (Stackebrandt et al., 1988 Woese et al., 1985), forming an internally coherent cluster at an Sab of 0.60. Internally, the family contains two subgroups composed of the type species of Halomonas, H. elongata and Halomonas halmophilum (formerly Flavobacterium halmophilum). This cluster forms at an Sab of 0.66. The companion cluster contains H. subglaciescola and D. aesta and forms at an Sab of 0.67. The position of the other halomonads (Table 1) within the phylogeny is not presently known.