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REVIEW ARTICLE
Left Ventricular Non-compaction: Is It Genetic?
Teck Wah Ting
1,2
•Saumya Shekhar Jamuar
1,2
•Maggie Siewyan Brett
3
•
Ee Shien Tan
1,2
•Breana Wen Min Cham
1
•Jiin Ying Lim
1
•Hai Yang Law
2,4
•
Ene Choo Tan
3
•Jonathan Tze Liang Choo
2,5
•Angeline Hwei Meeng Lai
1,2
Received: 13 April 2015 / Accepted: 13 June 2015
ÓSpringer Science+Business Media New York 2015
Abstract Left ventricular non-compaction (LVNC) is
reported to affect 0.14 % of the pediatric population. The
etiology is heterogeneous and includes a wide number of
genetic causes. As an illustration, we report two patients
with LVNC who were diagnosed with a genetic syndrome.
We then review the literature and suggest a diagnostic
algorithm to evaluate individuals with LVNC. Case 1 is a
15-month-old girl who presented with hypotonia, global
developmental delay, congenital heart defect (including
LVNC) and facial dysmorphism. Case 2 is a 7-month-old
girl with hypotonia, seizures, laryngomalacia and LVNC.
We performed chromosomal microarray for both our
patients and detected chromosome 1p36 microdeletion. We
reviewed the literature for other genetic causes of LVNC
and formulated a diagnostic algorithm, which includes
assessment for syndromic disorders, inborn error of meta-
bolism, copy number variants and non-syndromic mono-
genic disorder associated with LVNC. LVNC is a relatively
newly recognized entity, with heterogeneity in underlying
etiology. For a systematic approach of evaluating the
underlying cause to improve clinical care of these patients,
a diagnostic algorithm for genetic evaluation of patients
with LVNC is proposed.
Keywords 1p36 Deletion syndrome Left ventricular
non-compaction Developmental delay Review of genetic
etiology Diagnostic algorithm
Introduction
Left ventricular non-compaction (LVNC), also known as
‘‘spongy’’ myocardium, is a form of cardiomyopathy,
which is characterized by prominent left ventricular tra-
beculae, and deep intertrabecular recesses. It was first
described in 1932 but only recently, in 2006, classified as a
distinct form of primary genetic cardiomyopathy by the
American Heart Association [23,42]. The prevalence of
LVNC in children is reported to be 0.14 % [33]. LVNC is
commonly diagnosed on two-dimensional (2D) echocar-
diography and either can exist in isolation or coexist with
other structural heart disease. Complications related to
LVNC can include congestive cardiac failure, arrhythmia
and thromboembolic events.
The genetic etiology of LVNC is heterogeneous [8,10,
44]. LVNC has been described in both sporadic and
familial forms. In the familial form, inheritance can be
autosomal recessive, autosomal dominant or sex linked.
Prompt and accurate diagnosis will be important for
anticipatory management of associated medical problems
and for counseling of recurrence risk in the family. How-
ever, the extent of genetic evaluation that needs to be
performed to delineate the etiology remains a clinical
challenge.
&Saumya Shekhar Jamuar
saumya.s.jamuar@kkh.com.sg
1
Genetics Service, Department of Paediatrics, KK Women’s
and Children’s Hospital, 100 Bukit Timah Road,
Singapore 229899, Singapore
2
Singhealth Duke-NUS Paediatrics Academic Clinical
Programme, Singapore, Singapore
3
KK Research Centre, KK Women’s and Children’s Hospital,
Singapore, Singapore
4
DNA Diagnostic and Research Laboratory, KK Women’s and
Children’s Hospital, Singapore, Singapore
5
Cardiology Service, Department of Paediatric Subspecialties,
KK Women’s and Children’s Hospital, Singapore, Singapore
123
Pediatr Cardiol
DOI 10.1007/s00246-015-1222-5
As an illustration, we describe two patients with LVNC
who were referred to our genetics clinic for evaluation. A
diagnosis of LVNC was made in these two patients as the
ratio of left ventricular non-compacted to compacted
myocardium was [2:1 in end systole on 2D echocardiog-
raphy. Subsequent genetic work up revealed that both
patients had 1p36 microdeletion syndrome, a rare but
known cause of LVNC. In the subsequent sections of this
report, we evaluate the literature for all reported genetic
causes of LVNC and aim to propose a diagnostic approach
for genetic evaluation of children with LVNC.
Case Illustration
Case 1
Case 1 is the second child of non-consanguineous parents
of Malay descent with no significant family history of
congenital heart defects or developmental delay. Antenatal
history was unremarkable. She was born full term via
normal vaginal delivery. Her birth weight was 2580 gm
(3rd–10th percentile), length was 46 cm (3rd percentile)
and head circumference was 31 cm (3rd percentile). There
were no immediate postnatal complications, and she was
discharged home on day 2 of life. She presented to our
hospital at 4 months of age with poor weight gain. On
examination, she was noted to be in congestive cardiac
failure. She was tachypneic and tachycardic. A continuous
murmur was heard over left infraclavicular region. The
apex beat was displaced, and she had hepatomegaly.
Echocardiography showed a large patent ductus arteriosus
(PDA) with a dilated left heart. She underwent surgical
closure of the PDA when she was 5 months old. Repeat
echocardiogram (22 days postligation) showed LVNC and
dilated cardiomyopathy, and she was started on diuretics.
On subsequent follow-up, she was noted to have
developmental delay and hypotonia and was referred to the
genetics clinic for further evaluation. On examination (at
8 months), her weight was 5.97 kg (0.3 kg below 3rd
percentile), height was 63.6 cm (0.5 cm below 3rd per-
centile) and head circumference was 39.5 cm (1 cm below
3rd percentile). She was noted to have minor facial
anomalies, including deep set eyes and midface hypoplasia,
but not suggestive of any specific syndromic diagnosis.
Cardiac examination revealed normal first and second heart
sounds with a soft ejection systolic murmur at the left
sternal edge. Respiratory and abdominal examinations
were normal. Neurological examination revealed hypotonia
but normal reflexes. Her developmental age was assessed
to be around 5 months. She developed seizures at 1 year
old; electroencephalography showed multifocal spikes, and
MRI brain showed right subependymal heterotopia. At her
last review at 15 months old, her height was 74 cm
(10–25th percentile), weight was 8.4 kg (10–25th per-
centile) and head circumference was 40 cm (3 cm less than
3rd percentile). Her karyotype was normal.
Case 2
Case 2 is the first child of non-consanguineous parents of
Chinese descent with no significant family history of
congenital heart defects or developmental delay. There
were no concerns during the initial antenatal period, but at
37 weeks of gestation, fetal movement was decreased. A
fetal ultrasound showed cardiomegaly and an emergency
lower segment cesarean section was performed. Her birth
weight was 2900 gm (50th percentile), length was 47 cm
(10th percentile) and head circumference was 34 cm (50th
percentile). APGAR scores were 5 and 7 at 1 and 5 min
after birth, respectively. She was resuscitated and intubated
at birth for persistent hypoxia. On echocardiography per-
formed for poor oxygen saturation, she was diagnosed to
have persistent pulmonary hypertension and PDA. She was
Fig. 1 Schematic diagram showing the chromosomal microdeletion (in red square) for case 1 and case 2. Deletion of PRDM16 (in red circle)
has been reported to lead to LVNC
Pediatr Cardiol
123
treated for presumed sepsis and discharged after 1 week.
She was readmitted at 2 weeks of age for respiratory dis-
tress. Repeat echocardiography (at 2 weeks old) showed
biventricular hypertrophy, a small PDA and a normal
biventricular contractility with a fractional shortening of
29.7 %. Blood alpha glucosidase level (to exclude Pompe
disease) and inborn error of metabolism screening (plasma
amino acid, plasma acylcarnitine profile, plasma lactate
and urine organic acid) were normal. On serial echocar-
diography, she was found to have LVNC at 2 months old.
At 3 months old, she developed generalized seizures. She
was also found to have hypotonia and head lag. She had no
dysmorphic features. Analysis of blood and cerebrospinal
fluid showed no evidence of infection or inborn error of
metabolism. Electroencephalography (EEG) showed
epileptiform activity. MRI brain showed no significant
abnormality. MRI heart done in the same setting confirmed
LVNC. Other medical problems include laryngomalacia
which required laser laryngoplasty as well as obstructive
sleep apnea which required noninvasive positive pressure
ventilation. Patient is now 7 months old with growth
parameters at 50th percentile. She still has mild motor
delay. She does not have arrhythmia or cardiac failure. Her
karyotype was normal.
Table 1 Comparison of
phenotype of patients with 1p36
deletion syndrome described in
the literature with our patients
Clinical features Battaglia et al. [4]. Patient 1 Patient 2
Craniofacial features
Microbrachycephaly 39/60 (65 %) ?-
Large, late closing anterior fontanelle 30/39 (77 %) --
Straight eye brows 60/60 (100 %) --
Deep set eyes 60/60 (100 %) ?-
Epicanthus 30/60 (50 %) --
Broad nasal root/bridge 60/60 (100 %) ?-
Midface hypoplasia 60/60 (100 %) ?-
Posteriorly rotated/low set/abnormal ears 20/60 (40 %) ?-
Long philtrum 60/60 (100 %) --
Pointed chin 60/60 (100 %) --
Limbs/skeletal defects
Brachydactyly/camptodactyly 48/60 (80 %) --
Short feet 48/60 (80 %) --
Skeletal anomalies 13/32 (41 %) -–
Visceral anomalies
Congenital heart defects 34/48 (71 %) ?-
Non-compaction cardiomyopathy 11/48 (23 %) ??
Dilated cardiomyopathy 2/48 (4 %) ?-
Gastrointestinal anomalies 5/18 (28 %) --
Anal anomalies 2/60 (3 %) --
Genitourinary tract defects
Renal abnormalities 4/18 (22 %) -Not checked
External genitalia abnormalities 15/60 (25 %) --
Neurological findings
Congenital hypotonia 57/60 (95 %) ??
Seizures 26/60 (44 %) ??
EEG abnormalities 34/34 (100 %) ??
Brain abnormalities 43/49 (88 %) ?-
Vision problems 23/44 (52 %) -–
Visual inattention 28/44 (64 %) --
Sensorineural deafness 9/32 (28 %) --
Development findings
Developmental delay 60/60 (100 %) ??
Mental retardation 52/60 (87 %) ?N.A.
Poor/absent expressive language 60/60 (100 %) ?N.A.
Behavioral disorders 28/60 (47 %) --
Pediatr Cardiol
123
Results
Chromosomal microarray analysis (CMA) was carried out
using the Agilent 4 9180 K CGH ?SNP catalogue array
(Agilent Technologies Inc, Santa Clara, CA, USA).
Genomic DNA from both patients was hybridized against
the Agilent Euro Female reference. Data were scanned at a
resolution of 5 land analyzed with the Agilent
Cytogenomics software version 2.5 using the ADM-2 set-
ting which provides a practical average resolution of 50 kb.
Case 1 had a loss of 3.49 Mb at Chromosome 1p36 (Chr1:
746,608–4,240,206 bp), while Case 2 had a loss of 3.4 Mb
at Chromosome 1p36 (Chr1:746,608–4,144,742 bp) (both
coordinates in GRCh37/hg19) (Fig. 1). These findings on
CMA are consistent with the diagnosis of 1p36 microdele-
tion syndrome.
Fig. 2 Clinical approach of an
individual with left ventricular
non-compaction (LVNC)
Pediatr Cardiol
123
Discussion
Here, we describe two individuals with LVNC in association
with developmental delay who were subsequently diagnosed
with 1p36 microdeletion syndrome. 1p36 microdeletion
syndrome is one of the commoner microdeletion syndromes
and has a reported incidence of 1:5000–1:10,000 [35]. It is
caused by loss of genetic material at the terminal band on the
short arm of chromosome 1. The majority of patients have
distinctive facies (deep set eyes, straight eyebrows, long
philtrum, small chin and posteriorly rotated ears), hypotonia,
learning difficulties, seizures, visual and hearing problems
and congenital anomalies involving multiple organs includ-
ing congenital heart defects such as LVNC (Table 1)[4].
There are recent reports that facial dysmorphism in children
with 1p36 deletion syndrome can be mild and variable [36]
as was the case in both our patients. Patients with 1p36
microdeletion syndrome need long-term medical follow-up.
Over time, some show improvement in motor milestones,
social interaction and adaptive behavior [4]. The cytogenetic
aberration is typically detected on CMA, although in some
individuals, the deletion is large enough to be picked up on
conventional karyotype.
LVNC has been reported to be present in 23 % of patients
in cohort studies of 1p36 deletion syndrome [4]. Mutations in
or deletions involving PRDM16 gene (OMIM#605557),
located at 1p36.32, have been implicated as a cause of both
LVNC and dilated cardiomyopathy. Disruption of PRDM16
impairs proliferative capacity during cardiogenesis. Model-
ing of PRDM16 haploinsufficiency in zebra fish resulted in
both contractile dysfunction and uncoupling of cardiomy-
ocytes, which could result in LVNC [3]. In both our patients,
their deletions involved PRDM16 (Fig. 1).
Beyond 1p36 microdeletion syndrome, other etiologies
for LVNC in children can be divided into 4 groups: syn-
dromic disorders, inborn errors of metabolism (IEM),
monogenic disorders and environmental causes. In a child
who is diagnosed with LVNC, it is important to investigate
the underlying cause as some of the conditions are poten-
tially treatable. For others, establishing a diagnosis allows
for gene/diagnosis specific surveillance and anticipatory
management for associated medical problems. Finally,
diagnosing the underlying condition enables more accurate
genetic counseling for the family.
Table 2 Syndromes and copy number variants (CNV) associated
with LVNC
Syndromes associated with aneuploidies
Turner syndrome [1,43]
Trisomy 21 [27]
Trisomy 18 [5]
Trisomy 13 [25]
Syndromes associated with copy number variations
Velocardiofacial syndrome [21,29]
1p36 deletion syndrome [4]
Syndromes associated with neuromuscular diseases
Duchenne muscular dystrophy; Becker muscular dystrophy
[17,38]
Limb girdle muscular dystrophy [20]
Multiminicore disease [37]
Other syndromes
Sotos syndrome [24]
Marfan syndrome [18]
Noonan syndrome [2]
LEOPARD syndrome [19]
Cornelia De Lange syndrome [9]
Roifman syndrome [22]
Hypomelanosis of Ito [8]
Nail patella syndrome [12]
Other CNV
8p23.1 deletion [6]
Trisomic for the 4q31 ?qter region and monosomic for the
1q43 ?1qter [7,41]
1q43 deletion [15]
Distal 5q deletion [28]
Table 3 Inborn errors of metabolism associated with LVNC
Gene Phenotype
Barth syndrome [16]TAZ at Xq28 Proximal myopathy, ventricular arrhythmia, neonatal
hypoglycemia, neutropenia, urinary excretion of
3-methylglutaconic acid
GSD type 1b [13]G6PC at 17q21 Hypoglycemia, hepatomegaly, neutropenia
Malonyl coenzyme A decarboxylase
deficiency [30]
MLYCD at 16q24 Hypoglycemia, metabolic acidosis, developmental delay
Cobalamin C deficiency [39]MMACHC at 1p34.1 Global developmental delay, failure to thrive, cytopenia,
increased urinary excretion of methylmalonic acid, metabolic
acidosis with high ketones, high homocysteine
Mitochondrial disorder [11,31] Heterogeneous Multisystem involvement, lactic acidosis
Pediatr Cardiol
123
Firstly, a child diagnosed with LVNC should be evalu-
ated for signs of complications such as heart failure,
arrhythmia and thromboembolism (Fig. 2). The presence of
acute symptoms like chest pain and dyspnea will need to be
looked into urgently. Myocardial ischemia and myocarditis
will need to be excluded with ECG, cardiac enzymes and
urgent echocardiography. These complications will need
urgent attention and intervention. Other information which
should be gathered include if LVNC coexists with other
form of heart defects or cardiomyopathy. Family history of
LVNC should be elucidated, and screening echocardiog-
raphy for first degree relatives should be considered.
Subsequent evaluation should include assessment for
genetic syndromes. Examination should focus on assess-
ment for craniofacial dysmorphism, proximal myopathy
and learning disability (Table 2). If a specific genetic
syndrome is recognized, confirmation of the syndrome via
confirmatory testing should be performed. If no genetic
syndrome is identified, investigations to look for abnor-
malities related to IEM should be considered next. Meta-
bolic acidosis, lactic acidosis and/or abnormal urine
organic acid results would suggest a diagnosis of an IEM.
Clinical suspicion of IEM can be confirmed by enzyme
testing or genetic testing (Table 3).
If no specific diagnosis of genetic syndrome or inborn
error of metabolism is apparent, CMA to look for
microdeletion or microduplication syndromes is the next
suggested step. CMA can detect genetic imbalances in
patients with greater resolution than conventional kary-
otyping (Table 2). The implications of these changes, also
known as copy number variants (CNV), will depend on the
region of these CNV. Digilio et al. [8] reported that in a
group of 25 patients with syndromic LVNC, diagnosis was
made with standard chromosome analysis and subtelomeric
fluorescent in situ hybridization in seven patients.
Microarray analysis in the remaining patients detected two
patients with pathogenic CNV. The overall diagnostic yield
of the combination of all the methods was one-third of this
cohort of patients with syndromic LVNC.
If no pathogenic variant is identified on CMA, massively
parallel sequencing (MPS) of candidate genes can be
considered to detect monogenic disorders (Table 4).
Schaefer et al. [32] reported a case of an infant with severe
LVNC with compound heterozygous mutations in the
Table 4 Monogenic disorders associated with LVNC
Phenotype (OMIM ID) Gene Chromosome location (hg19) Additional phenotype
LVNC1 (604169) DTNA Ch18:32,073,253–32,471,807 Prominent endomyocardial trabeculations
LVNC2 (609470) No candidate
gene identified
Ch11:0–21,700,000 Nil
LVNC3 (601493) LDB3 Ch10:88,426,541–88,495,828 Nil
LVNC4 (613424) ACTC1 Ch15:35,080,296–35,087,926 Dilated cardiomyopathy
Ventricular hypertrophy(some)
Restrictive cardiomyopathy (some)
Ventricular arrhythmia (some)
LVNC5 (613426) MYH7 Ch14:23,881,946–23,904,869 Pulmonary artery hypoplasia (some)
Left ventricular dilatation
CCF
LVNC6 (601494) TNNT2 Ch1:201,328,135–201,346,835 Left ventricular dilation
Congestive heart failure
Sudden death
Myocyte hypertrophy
LVNC7 (615092) MIB1 Ch18:19,321,289–19,450,917 Nil
LVNC8 (615373) PDRM16 Ch1:2,985,564–3,355,184 Left ventricular dysfunction
LVNC9 (611878) TPM1 Ch15:63,334,837–63,364,113 Dilated cardiomyopathy
LVNC10 (615396) MYBPC3 Ch11:47,352,956–47,374,252 Cardiomyopathy, dilated
Heart failure, progressive and sometimes fatal
Ventricular flutter, non-sustained (in some patients)
N.A. SCN5A [34] Ch3:38,589,552–38,691,163 Arrhythmia
N.A. LMNA [14] Ch1:156,052,368–156,109,879 Dilated cardiomyopathy
Long QT Syndrome [26] Heterogeneous Long corrected QT interval, Torsade de pointes
or T wave alternans on ECG; syncope during
physical exertion
Pediatr Cardiol
123
MYBPC3 gene identified by MPS within 3 days. The
diagnosis enabled screening for other family members and
genetic counseling. In a laboratory providing diagnostic
services for LVNC for associated genes by MPS, clinically
significant variants were detected in 24 % of 108 broadly
referred individuals with LVNC. Variants were present in
MYH7 (13.6 %), MYBPC3(4.0 %), TNNI3 (2.0 %), VCL
(2.8 %), TAZ (1.1 %) and TNNT2 (1.0 %) [40]. With
advancement in techniques of molecular genetic investi-
gations, more genetic mutations associated with LVNC can
be identified.
Conclusion
Left ventricular non-compaction in children is a form of
cardiomyopathy that warrants investigations into the
underlying etiology. LVNC is heterogeneous in its genetic
etiologies. Identification of the underlying genetic aberra-
tions is important to understand the pathophysiology of
LVNC, to plan for surveillance for associated medical
problems as well as to enable genetic counseling and
prenatal testing for affected families.
Acknowledgments We thank the patients and their families
reported herein for their participation in this research.
Compliance with Ethical Standards
Conflict of interest None.
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