Davey L Jones

Bangor University · College of Natural Sciences

Commercial herbal leys (multispecies swards) are rapidly gaining popularity due to their potential to deliver an enhanced suite of ecosystem services. However, little is known about their impact on lamb production. A 2-ha split-field experiment using an herbal and grass-clover ley (0.33 ha paddock − 1 , n = 3 per sward) aimed to evaluate the effect...

While many studies have examined the role of biochar in carbon (C) accrual in short-term scale, few have explored the decadal scale influences of biochar on non-biochar C, e.g., native soil organic C (SOC) and added substrate. To address this knowledge gap, soils were collected from decade-old biochar field trials located in the United Kingdom (Cam...

To predict how biodiversity will respond to global change, it is crucial to understand the relative roles of abiotic drivers and biotic interactions in driving associations between the biodiversity of disparate taxa. It is particularly challenging to understand diversity–diversity links across domains and habitats, because data are rarely available...

Microplastics threaten soil ecosystems, strongly influencing carbon (C) and nitrogen (N) contents. Interactions between microplastic properties and climatic and edaphic factors are poorly understood. We conducted a meta-analysis to assess the interactive effects of microplastic properties (type, shape, size, and content), native soil properties (te...

Herbal leys (multispecies swards) can potentially deliver greater agronomic and environmental benefits than conventional grass-clover swards in grazed agroecosystems. However, despite their popularity in agri-environment schemes, little is known about the effect of herbal leys on soil physical (e.g., porosity), chemical (e.g., carbon), and biologic...

To reveal the feedbacks and regulating mechanisms of microplastic types and doses on microbial community, a microcosm experiment was carried out with two non-degradable microplastics [polyethylene (PE) and polyvinyl chloride (PVC)] and four biodegradable microplastics [poly(butylene succinate) (PBS), polyhydroxyalkanoates (PHA), poly(butyleneadipat...

Background Plastics pollution and antimicrobial resistance (AMR) are two major environmental threats, but potential connections between plastic associated biofilms, the ‘plastisphere’, and dissemination of AMR genes are not well explored. Results We conducted mesocosm experiments tracking microbial community changes on plastic surfaces transitioni...

We construct a Bayesian estimator for the dilution of a wastewater sample. When wastewater is diluted by rainwater an estimate of the level of dilution is required if we are to normalise sample measurements of disease markers such as SARS-CoV-2 RNA. We consider the situation where flow measurements are available, but will regularly be unreliable be...

The application of lime and mineral fertiliser is known to mitigate soil acidification and improve soil quality in improved grasslands. However, the long-term effect of simultaneous lime and fertiliser amendments on soil carbon (C) and sulphur (S) cycling is still poorly understood. To examine if soil pH or nutrient availability are the dominant fa...

Wastewater treatment plants are well known point sources of emissions of antimicrobial resistance genes (ARGs) into the environment. Although most work to date has focused on ARG dispersal via effluent, aerial dispersal in bioaerosols is a poorly understood, but likely important vector for ARG dispersal. Recent evidence suggests that ARG profiles o...

Wastewater-based surveillance serves as an effective tool for tracking the dissemination of pathogens and antimicrobial resistance (AMR) within communities, aiding in the monitoring and prediction of public health risks. We used metagenomic approaches and bioinformatics to investigate the abundance of pathogens and antibiotic resistance genes (ARGs...

Climate change is happening and causing severe impact on the sustainability of agroecosystems. We argue that many of the abiotic stresses associated with climate change will be most acutely perceived by the plant at the root-soil interface and are likely to be mitigated at this globally important interface. In this review we will focus on the direc...

Wastewater-based epidemiology is now widely used in many countries for the routine monitoring of SARS-CoV-2 and other viruses at a community level. However, efficient sample processing technologies are still under investigation. In this study, we compared the performance of the novel Nanotrap® Microbiome Particles (NMP) concentration method to the...

We construct a Bayesian estimator for the dilution of a wastewater sample, and use it to estimate the prevalence of SARS-CoV-2 in Wales using data from the Wales Environmental Wastewater Analysis and Surveillance for Health project (WEWASH). In Wales wastewater is diluted by rainwater so an estimate of the level of dilution is required if we are to...

Wastewater-based epidemiology (WBE) has proven to be a powerful tool for the population-level monitoring of pathogens, particularly severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). For assessment, several wastewater sampling regimes and methods of viral concentration have been investigated, mainly targeting SARS-CoV-2. However, the use...

To predict how biodiversity will respond to global change, it is crucial to understand the relative roles of abiotic drivers and biotic interactions in driving associations between the biodiversity of disparate taxa. It is particularly challenging to understand diversity-diversity links across domains and habitats, because data are rarely available...

The ability of the soil’s biological community to immobilise carbon (C) from substrates, often referred to as carbon use efficiency (CUE), has been shown to be dependent on the prevailing soil conditions and management regime, potentially leading to changes in C storage and functioning. However, there remains a lack of understanding about how soil...

Quantifying viruses in wastewater via RT-qPCR provides total genomic data but does not indicate the virus capsid integrity or the potential risk for human infection. Assessing virus capsid integrity in sewage is important for wastewater-based surveillance, since discharged effluent may pose a public health hazard. While integrity assays using cell...

Organic inputs to soils can accelerate soil organic matter (SOM) decomposition via so-called priming effects, but at the same time microbial biomass turnover can be accelerated – that will be termed as apparent priming effect. However, only a few studies have been set up to quantify the contribution of extra CO2 production from apparent priming. He...

The COVID-19 pandemic demonstrated the necessity for highly interdisciplinary, multi-stakeholder collaboration to enable effective public health practice and response. The application of wastewater monitoring to support the pandemic response was demonstrated quickly, leveraging existing scientific and engineering capability to develop rapidly metho...

Soil organic carbon (SOC) loss from intensive agriculture represents a major global concern. Consequently, strategies to improve soil management to enhance carbon (C) sequestration are urgently needed. Nutrient availability, especially nitrogen (N) and phosphorus (P), regulates soil C cycling and storage. While N effects are well studied, less is k...

Biostimulants and bioinoculants offer the potential to enhance nutrient use efficiency within agricultural cropping systems and thus reduce the amount of mineral fertilizers needed to support crop growth. Considerable uncertainty, however, exists about their efficacy under different management regimes. The present field-based study investigated the...

The COVID-19 pandemic demonstrated the need for rapid molecular diagnostics. Vaccination programs can provide protection and facilitate the opening of society, but newly emergent and existing viral variants capable of evading the immune system endanger their efficacy. Effective surveillance for Variants of Concern (VOC) is therefore important. Rapi...

Plant sulphur (S) deficiency occurs worldwide; however, in comparison to other macronutrients (e.g., N, P), limited attention has been paid to the content, composition, bioavailability, and cycling of S in soil. An increased knowledge of S biogeochemical cycling, however, can aid soil S management and plant S nutrition. This review discusses curren...

Wastewater-based epidemiology (WBE) has been commonly used for monitoring SARS-CoV-2 outbreaks. As sampling times and methods (i.e. grab vs composite) may vary, diurnal changes of viral concentrations in sewage should be better understood. In this study, we collected untreated wastewater samples hourly for 4 days at two wastewater treatment plants...

Biochar can enhance organic carbon storage and mitigate the adverse effects of pesticides in the soil. However, the mechanisms by which field-aging affects the impacts of biochar on herbicide behavior and the composition of microbial communities in the soil remain unclear. This study aimed to investigate the influences of aged and fresh biochar on...

Soluble protein makes an important contribution to the release of carbon dioxide (CO2) in soils, however, knowledge on the respiration and C use efficiency (CUE) characteristics of soluble protein-derived C by soil microorganisms remains limited. To address this issue, we sampled surface soils (0−10 cm) from seven tree monocultures and investigated...

Plastic debris (including macro-plastics, microplastics (MPs), and nanoplastics), defined as an emerging contaminant, has been proven to significantly affect soil ecosystem functioning. Accordingly, there is an urgent need to robustly quantify the pollution situation and potential sources of plastics in soils. China as the leading producer and user...

There is a growing body of evidence that suggests that both biodegradable and conventional (non-degradable) microplastics (MP) are hazardous to soil health by affecting the delivery of key ecological functions such as litter decomposition, nutrient cycling and water retention. Specifically, soil fauna may be harmed by the presence of MPs while also...

There is a major knowledge gap concerning the extent of microplastic pollution in agronomic regions of China, which represent a plastic use hotspot. In order to clarify the amendment of agronomic region and plastic film mulching mode to microplastics distribution, the characteristics of microplastics distributed in agricultural soils from three typ...

Norovirus (NoV) is a highly contagious enteric virus that causes widespread outbreaks and a substantial number of deaths across communities. As clinical surveillance is often insufficient, wastewater-based epidemiology (WBE) may provide novel pathways of tracking outbreaks. To utilise WBE, it is important to use accurate and sensitive methods for v...

Nitrogen oxides (NOx = NO + NO2) are important atmospheric pollutants that are directly harmful to human health. Recently in urban and industrial areas, synthetic materials have been developed and deployed to photocatalytically oxidize NOx to nitrate (NO3-) in order to improve air quality. We show that the natural presence of small amounts (≤5%) of...

Forest creation has the potential to reduce biodiversity loss and mitigate climate change but, tree disease emergence may counteract this. Further, given decadal timescales required for forest establishment, climate change is increasingly likely to act as a filter on plant community assembly. In the temperate lowlands succession takes 30 to 50 year...

Conventional and bio-organic fertilizers play an important role in maintaining soil health and promoting crop growth. However, the effect of organic fertilizers on the prevalence of antibiotic resistance genes (ARGs) in the vegetable cropping system has been largely overlooked. In this study, we investigated the impacts of soil properties and bioti...

Unlabelled: Grasslands (natural, semi-natural and improved) occupy approximately one-third of the terrestrial biosphere and are key for global ecosystem service provision, storing up to 30% of soil organic carbon (SOC). To date, most research on soil carbon (C) sequestration has focused on croplands where the levels of native soil organic matter (...

Over the last 50 years, the intense use of agricultural plastic in the form of mulch films has led to an accumulation of plastic in soil, creating a legacy of plastic in agricultural fields. Plastic often contains additives, however it is still largely unknown how these compounds affect soil properties, potentially influencing or masking effects of...

Agri‐environment schemes (AES) incentivise land‐management practices aimed at mitigating environmental impacts. However, their effectiveness depends on the duration and type of management. We modelled the potential for grassland AES options in Wales (UK) to achieve positive changes in plant diversity via change in soil conditions. We modelled the r...

Amino acids and peptides are important regulators of ecosystem functioning due to their potential role as direct nutrient sources for plants and soil microbes. However, the turnover and driving factors of these compounds in agricultural soils remain poorly understood. This study aimed to reveal the short-term fate of 14C-labeled alanine and tri-ala...

Agricultural soils are a major source of the potent greenhouse gas and ozone depleting substance, N 2 O. To implement management practices that minimize microbial N 2 O production and maximize its consumption (i.e., complete denitrification), we must understand the interplay between simultaneously occurring biological and physical processes, especi...

The factors regulating potential acquisition of sulphur (S)-containing amino acids by plant roots from the rhizosphere remain poorly understood. Using radio tracer (14 C and 35 S), we studied the competition for two S-containing amino acids (i.e., cysteine (Cys) and methionine (Met)) within 24 hours (h), by the rhizosphere microbial community and m...

Efficient fertiliser nitrogen (N) management is critical to global food production and ecosystem health. Considering sheep grazing systems as whole ecosystems, and quantifying key ecosystem services provided by the soil microbial community, including plant N supply and N pollution mitigation, is essential in assessments of N use efficiency (NUE). U...

Micro and macroplastics are emerging contaminants in agricultural settings, yet their impact on nitrogen (N) cycling and partitioning in plant-soil-microbial systems is poorly understood. In this mesocosm-scale study, spring barley (Hordeum vulgare L.) was exposed to macro or microplastic produced from low density polyethylene (LDPE) or biodegradab...

Aim The Paris Climate Agreement is pursuing efforts to limit global warming to less than 2 °C in this century, but increasing evidence shows that temperatures are likely to rise up to 4.8 °C by 2100. This points to an urgent need to investigate how the temperature impact on microbial regulation will endanger soil organic matter stability under warm...

Microplastics (MPs) pollution is becoming one of the most pressing environmental issues globally. MPs in the marine, freshwater and terrestrial environments have been fairly well investigated. However, knowledge of the atmospheric-mediated deposition of MPs within rural environments is limited. Here, we present the results of bulk (dry and wet) atm...

The process of nitrogen (N) transformation after microbial utilisation of organic and inorganic N is unclear. 15 N-glycine (Gly), 15 NH 4 + and 15 NO 3 − were used to investigate the uptake, release and reutilisation of N by microorganisms over 9 days. In addition, high amounts of unlabelled carbon (C) or N were added to explore how C or N availabi...

Air travel mediates transboundary movement of SARS-CoV-2. To prepare for future pandemics, we sought to understand air passenger behaviour and perceived risk during the COVID-19 pandemic. This study of UK adults (n = 2103) quantified knowledge of COVID-19 symptoms, perceived health risk of contracting COVID-19, likelihood of returning to the UK wit...

Arbuscular mycorrhizal fungi (AMF) and plant growth-promoting rhizobacteria (PGPR) are able to provide key ecosystem services, protecting plants against biotic and abiotic stresses. Here, we hypothesized that a combination of AMF (Rhizophagus clarus) and PGPR (Bacillus sp.) could enhance 33P uptake in maize plants under soil water stress. A microco...

This study aimed to explore the soil metabolic response to long-term fertiliser application and the effect of this response on the microbial community by taking advantage of the Woburn Organic Manuring Experiment (UK; operational since 1964). Untargeted metabolomes detected by gas chromatography-time of flight mass spectrometer/mass spectrometry (G...

Agricultural soil emissions are a balance between sinks and sources of greenhouse gases (GHGs). The fluxes of GHGs from soils are complex and spatially and temporally heterogenous. While the soil surface is the exchange site with the atmosphere and is commonly where GHG fluxes are measured, it is important to consider processes occurring throughout...

Microbial metabolism Successional stage Functional traits A B S T R A C T Organic nitrogen (N) is the most important N component of soil organic matter. However, knowledge on how tree species with different successional stages affect organic N transformations in soils remains limited. To address this issue, we sampled mineral soils (0-10 cm) under...

This manuscript showcases results from a large scale and comprehensive wastewater-based epidemiology (WBE) study focussed on multi-biomarker suite analysis of both chemical and biological determinants in 10 cities and towns across England equating to a population of ∼7 million people. Multi-biomarker suite analysis, describing city metabolism, can...

It is well established that air travel plays a key role in the global spread of many enteric and respiratory diseases, including COVID-19. Even with travel restrictions (e.g. mask wearing, negative COVID-19 test prior to departure), SARS-CoV-2 may be transmitted by asymptomatic or pre-symptomatic individuals carrying the virus. Due to the limitatio...

Grasslands play an important role in global food security. However, there are increasing pressures to improve the sustainability of ruminant farming. Precision nutrient management tools (e.g., proximal soil sensors for soil mapping) offer opportunities to improve nutrient use efficiency through spatially-variable nutrient application rate maps. Des...

International air travel is now widely recognised as one of the primary mechanisms responsible for the transnational movement and global spread of SARS-CoV-2. Monitoring the viral load and novel lineages within human-derived wastewater collected from aircraft and at air transport hubs has been proposed as an effective way to monitor the importation...

Within months of the COVID-19 pandemic being declared on March 20, 2020, novel, more infectious variants of SARS-CoV-2 began to be detected in geospatially distinct regions of the world. With international travel being a lead cause of spread of the disease, the importance of rapidly identifying variants entering a country is critical. In this study...

This manuscript showcases results from a large scale and comprehensive wastewater-based epidemiology (WBE) study focussed on multi-biomarker suite analysis of both chemical and biological determinants in 10 cities and towns across England equating to a population of ~7 million people. Multi-biomarker suite analysis, describing city metabolism, can...

Introduction Biological N2 fixation in feather-mosses is one of the largest inputs of new nitrogen (N) to boreal forest ecosystems; however, revealing the fate of newly fixed N within the bryosphere (i.e. bryophytes and their associated organisms) remains uncertain. Methods Herein, we combined ¹⁵N tracers, high resolution secondary ion mass-spectr...

Extreme weather events are increasing in frequency and magnitude with profound effects on ecosystem functioning. Further, there is now a greater likelihood that multiple extreme events are occurring within a single year. Here we investigated the effect of a single drought, flood or compound (flood + drought) extreme event on temperate grassland eco...

Sulphur-containing amino acids (i.e. Cysteine (Cys) and methionine (Met)) constitute an important proportion of the soil organic sulphur. However, detailed information regarding the microbial transformation of Cys and Met at a molecular level remain poorly characterised. To trace the fate of carbon (C) and sulphur (S) derived from Cys and Met in an...

Background: The COVID-19 pandemic necessitated rapid real-time surveillance of epidemiological data to advise governments and the public, but the accuracy of these data depend on myriad auxiliary assumptions, not least accurate reporting of cases by the public. Wastewater monitoring has emerged internationally as an accurate and objective means for...