ArticlePDF Available

Atomic-scale insight into the formation, mobility and reaction of Ullmann coupling intermediates

Authors:

Abstract and Figures

The Ullmann reaction of bromobenzene, the simplest coupling reagent, to form biphenyl on a Cu surface proceeds via a highly mobile organometallic intermediate in which two phenyl groups extract and bind a single surface Cu atom.
Content may be subject to copyright.
This journal is ©The Royal Society of Chemistry 201 4 Chem. Commun.
Cite this: DOI: 10.1039/c3cc47002d
Atomic-scale insight into the formation, mobility
and reaction of Ullmann coupling intermediates
Emily A. Lewis, Colin J. Murphy, Melissa L. Liriano and E. Charles H. Sykes*
The Ullmann reaction of bromobenzene, the simplest coupling
reagent, to form biphenyl on a Cu surface proceeds via a highly
mobile organometallic intermediate in which two phenyl groups
extract and bind a single surface Cu atom.
The Cu-catalysed coupling of two aryl halides to form a biaryl
molecule, commonly known as the Ullmann reaction, is one of
the oldest organic reactions promoted by a transition metal, and it is
still used today for a number of synthetic procedures.
1,2
However,
unlike other metal-mediated reactions, the Ullmann mechanism is
still relatively unclear. The original Ullmann reaction required
stoichiometric amounts of Cu to proceed, but modern iterations
of the reaction utilize catalytic amounts of Cu bound to ligands. The
variety of Cu species that are known to promote the reaction, in
addition to the multiple oxidation states in which Cu can exist, has
prevented the absolute determination of the catalytic species.
Early surface science studies attempted to approach this issue by
using temperature programmed desorption and high-resolution
electron energy loss spectroscopy to study iodobenzene on Cu(111)
surfaces.
3,4
This work suggested that coupling of the two phenyl
groups is the rate limiting step (RLS) and indicated that the
intermediate phenyl species are aligned roughly parallel to the
surface. Scanning tunnelling microscope (STM) studies built upon
this work, demonstrating that phenyl intermediates are stabilized at
Cu(111) steps,
5–7
and using p-diiodobenzene, McCarty et al. showed
that the intermediate phenyl species align end to end with their
rings parallel to the surface forming a chain.
8
More recent STM studies have taken advantage of this chain
formation, using complex halo-aromatic compounds and thermal
anneals to create polymer networks on a variety of surfaces.
9–18
These studies have noted a number of intermediate structures for
the surface polymerizations, and it is debated whether a metal atom
is incorporated into the complexes, resulting in an organometallic
structure. While it is well known that metal surfaces are not static
and that surface atoms can be extracted by adsorbates,
19–26
confirmation of a Cu organometallic intermediate in the
Ullmann coupling would provide valuable insight into the reaction
mechanism. Here, using the simplest Ullmann reagent, bromoben-
zene, in a model system amenable to study by high-resolution STM,
we demonstrate the formation, assembly and reaction of a
highly mobile organometallic intermediate comprised of two
phenyl groups and a surface Cu atom.
We studied the progression of the Ullmann reaction from weakly
adsorbed reactants, through intermediates to the biphenyl product
by depositing bromobenzene onto a Cu(111) surface held at 5 K.
Thermally annealing the sample to a wide range of tempera-
tures (5–350 K) and cooling back to 5 K for high-resolution
imaging enabled us to characterize the relevant steps of the
reaction with atomic-scale resolution as shown in Fig. 1.
Upon deposition at 5 K, the bromobenzene weakly adsorbs on the
Cu surface and remains intact up to 80 K (Fig. 1a). The adsorbates
assemble into clusters of 3, 4, or 5 molecules with ‘like’ ends pointing
toward the centre of the structures, as shown in the inset. Although
we cannot determine from our images which ends of the molecules
assemble in the cluster centres, previous studies indicate that the Br
ends of the molecules should attractively interact.
13,16,27
Annealing the sample to 160 K induces C–Br bond dissociation,
and an intermediate structure is formed (Fig. 1b). We propose
that these structures are the organometallic intermediates of
the Ullmann reaction and consist of two phenyl groups bound
to a central Cu atom that has been extracted from the surface
(Fig. 2c). These intermediates image as tri-lobed structures with
the central Cu atom appearing rounder and slightly more
pronounced than the two phenyl species (Fig. 2a and b). By
taking line scans along the length of these features and
measuring the distance between the first and third peak, we
determined that the length of the structure is 1.01 0.06 nm.
This value agrees well with the theoretical length of the inter-
mediate, 0.98 nm, corresponding to two Cu–C bonds
16
and two
phenyl diameters. Small round protrusions are located beside
the phenyl–Cu–phenyl intermediate structures, and consistent
Department of Chemistry, Tufts University, 62 Talbot Ave., Medford, MA 02155,
USA. E-mail: charles.sykes@tufts.edu; Fax: +1 617-373-3443; Tel: +1 617-373-3773
Electronic supplementary information (ESI) available. See DOI: 10.1039/
c3cc47002d
Received 12th September 2013,
Accepted 28th November 2013
DOI: 10.1039/c3cc47002d
www.rsc.org/chemcomm
ChemComm
COMMUNICATION
Published on 29 November 2013. Downloaded by Tufts University on 12/12/2013 18:39:15.
View Article Online
View Journal
Chem. Commun. This journal is ©The Royal Society of Chemistry 201 4
with other work,
9,16,17
we assign them as Br atoms. The ratio of
the Br atoms to phenyl species is 1 : 1, further supporting that
bromobenzene has dissociated.
To confirm that the central Cu atom in the organometallic
species is fully extracted rather than just raised
28
from the surface,
we examined the mobility of the intermediate species at 80 K. Fig. 3
shows a series of STM images taken over 100 minutes, forming a
time-lapse movie (full movie in ESI). It is apparent that the majority
of species are mobile on the surface except for a small cluster that is
stabilized by a Cu surface defect in the lower right corner for
reference. The diffusion of the intermediate indicates that the Cu
atom must be fully extracted from the surface. Additionally,
although we cannot image the Br atoms at 80 K, we expect that
they play a role in stabilizing the transient clusters;
29
the assemblies
of intermediates that dynamically form and disperse (Fig. 3)
are similar to those observed at low temperature containing Br
atoms(Fig.2).Furthermore,theabsence of pure Br islands supports
that the Br atoms are driven energetically to mix with the phenyl–
Cu–phenyl intermediate structures.
The mobility of the organometallic intermediate also gives
insight into the mechanism of the Ullmann reaction on Cu(111).
Since the barrier is 50% greater to remove a Cu atom from the (111)
terrace vs. astep,
30
and since there is not an appreciable 2D gas of
Cu adatoms present at 160 K,
31
we postulate that the Cu atom in the
intermediate must be extracted from the step. The fact that we do
not observe an increase in Cu surface defects compared to the clean
Cu crystal, and that the number of phenyl and Br species doubles in
the clusters of intermediates relative to the intact bromobenzene
clusters, further supports that Cu atoms are removed from the step
rather than the initial adsorption site on the terrace. We also
demonstrate that intact bromobenzene diffuses on the surface at
80 K, and since the diffusion barriers of Br atoms and phenyl groups
on the surface were calculated to be 60 meV
32
and 90 meV,
28
respectively,weconcludethatphenyl groups are able to diffuse to
the most easily extracted Cu atoms at the steps. Due to the mobility
of both the intact bromobenzene and the dissociation products, we
cannot determine upon annealing whether two bromobenzene
molecules dissociate at a step andextractaCuatomorwhether
the C–Br bond dissociation occurs on the terrace leaving phenyl
groups to diffuse to the steps and form the intermediate. We can,
however, rule out that the STM tip is participating in the Cu atom
extraction, as phenyl–Cu–phenyl intermediates are observed on every
new area of the surface scanned and their structure does not change
with repeated imaging.
After a 350 K anneal, we find that the reaction progresses to
completion and biphenyl begins to form (Fig. 1c), in agreement
with previous reports.
33,34
By taking line scan measurements
across the length of the molecules, we find that they are 0.63
0.03 nm, which agrees well with the theoretical value of 0.71 nm
for biphenyl. The exclusive presence of biphenyl on the Cu step
edges suggests that it is formed at these sites, indicating that
Fig. 1 STM images displaying the progression of the Ullmann reaction on Cu(111). All imaging at 5 K; all scale bars = 3 nm. (a) Intact bromobenzene on
Cu(111) that has been annealed to 80 K. Clusters of 3, 4, and 5 molecules dominate. Insets: high resolution images of the clusters taken after depositionat
5 K (before the 80 K anneal). Top = 1.45 1.47 nm
2
; bottom = 1.79 1.95 nm
2
. (b) After annealing to 160 K, clusters of the organometallic Ullmann
coupling intermediates and Br atoms are present on the surface. (c) Annealing the sample to 350 K results in the formation of biphenyl. Insets: high
resolution images illustrating the different appearance of the three-lobed phenyl–Cu–phenyl intermediate (top = 1.52 1.47 nm
2
) and the two-lobed
biphenyl product (bottom = 1.19 1.09 nm
2
).
Fig. 2 STM images and model showing the assembly and high-resolution
details of the organometallic intermediate. All imaging at 5 K. (a) Clusters of
the organometallic intermediates and Br atoms. Scale bar = 2 nm. (b) 3D
rendering of a single phenyl–Cu–phenyl intermediate, illustrating the
shape of the species. (c) Model showing the proposed bonding configu-
ration of the phenyl species to the Cu atom.
Communication ChemComm
Published on 29 November 2013. Downloaded by Tufts University on 12/12/2013 18:39:15.
View Article Online
This journal is ©The Royal Society of Chemistry 201 4 Chem. Commun.
the organometallic intermediates release the Cu atoms at the
step edge/kink sites during the formation of biphenyl. Although
we cannot exclude the possibility that the biphenyl product has
simply diffused to these sites following its formation, this
proposed mechanism is consistent with the Evans–Polanyi
principle.
35
Returning the Cu atom to a step site yields a more
exothermic reaction as compared to leaving the Cu atom in a
more under-coordinated state on a terrace; therefore the activa-
tion barrier to form biphenyl (which our experiments suggest is
the RLS of the surface Ullmann reaction) at the step edge/kink
site will be lower and its formation at this site will be favoured.
In contrast to the reaction-rate-limited description of the surface
Ullmann reaction put forth by Bent and coworkers,
3,4
our direct
observation of biphenyl on the surface
33
indicates that its
formation is, in fact, desorption rate limited.
Using a well-characterized model system, we have provided
insight into the Ullmann reaction mechanism. First, we find
that the intermediate of the reaction is organometallic in
nature with a removed Cu atom being fully incorporated into
the structure. The low temperature at which the phenyl–
Cu–phenyl complex forms is consistent with the RLS for the
reaction being the formation of biphenyl, not the extraction of a
surface Cu atom or formation of the intermediate. Additionally,
the incorporation of single Cu atoms into the intermediate
structure may lower the barrier of biphenyl formation. These
results provide new insight into the reaction pathway of the
heterogeneously catalysed Ullmann reaction. This information
about the formation and mobility of the organometallic inter-
mediate will also enable us to explore and possibly control
selectivity in cross-coupling reactions and adds to the current
knowledge of using Ullmann-type reactions for the formation of
2D surface networks.
E.A.L. and E.C.H.S. thank the U.S. Department of Energy
(Grant No. FG02-10ER16170) and C.J.M. and M.L.L. thank the
U.S. National Science Foundation (Grant No. CBET-1159882)
for their support.
Notes and references
1 J. Hassan, M. Se
´vignon, C. Gozzi, E. Schulz and M. Lemaire, Chem.
Rev., 2002, 102, 1359.
2 E. Sperotto, G. P. M. van Klink, G. van Koten and J. G. de Vries,
Dalton Trans., 2010, 39, 10338.
3 M. Xi and B. E. Bent, Surf. Sci., 1992, 278, 19.
4 M. Xi and B. E. Bent, J. Am. Chem. Soc., 1993, 115, 7426.
5 P. S. Weiss, M. M. Kamna, T. M. Graham and S. J. Stranick,
Langmuir, 1998, 14, 1284.
6 S.-W. Hla, L. Bartels, G. Meyer and K.-H. Rieder, Phys. Rev. Lett.,
2000, 85, 2777.
7 G. S. McCarty and P. S. Weiss, J. Phys. Chem. B, 2002, 106, 8005.
8 G. S. McCarty and P. S. Weiss, J. Am. Chem. Soc., 2004, 126, 16772.
9 J. A. Lipton-Duffin, O. Ivasenko, D. F. Perepichka and F. Rosei, Small,
2009, 5,592.
10 R. Gutzler, H. Walch, G. Eder, S. Kloft, W. M. Heckl and
M. Lackinger, Chem. Commun., 2009, 4456.
11 M. Bieri, M. Treier, J. Cai, K. Aı
¨
t-Mansour, P. Ruffieux, O. Gro
¨ning,
P. Gro
¨ning, M. Kastler, R. Rieger, X. Feng, K. Mu
¨llen and R. Fasel,
Chem. Commun., 2009, 6919.
12 M. Bieri, M.-T. Nguyen, O. Gro
¨ning, J. Cai, M. Treier, K. Aı
¨
t-Mansour,
P. Ruffieux, C. A. Pignedoli, D. Passerone, M. Kastler, K. Mu
¨llen and
R. Fasel, J. Am. Chem. Soc., 2010, 132, 16669.
13 H. Walch, R. Gutzler, T. Sirtl, G. Eder and M. Lackinger, J. Phys.
Chem. C, 2010, 114, 12604.
14 M. O. Blunt, J. C. Russell, N. R. Champness and P. H. Beton, Chem.
Commun., 2010, 46, 7157.
15 J. Cai, P. Ruffieux, R. Jaafar, M. Bieri, T. Braun, S. Blankenburg,
M. Muoth, A. P. Seitsonen, M. Saleh, X. Feng, K. Mu
¨llen and
R. Fasel, Nature, 2010, 466, 470.
16 W. Wang, X. Shi, S. Wang, M. A. van Hove and N. Lin, J. Am. Chem.
Soc., 2011, 133, 13264.
17 K.-H. Chung, B.-G. Koo, H. Kim, J. K. Yoon, J.-H. Kim, Y.-K. Kwon
and S.-J. Kahng, Phys. Chem. Chem. Phys., 2012, 14, 7304.
18 Q. Fan, C. Wang, Y. Han, J. Zhu, W. Hieringer, J. Kuttner, G. Hilt and
J. M. Gattfried, Angew. Chem., Int. Ed., 2013, 52, 4668.
19 X.-C. Guo and R. J. Madix, J. Phys. Chem. B, 2003, 107, 3105.
20 J. V. Barth, J. Weckesser, N. Lin, A. Dmitriev and K. Kern, Appl. Phys.
A, 2003, 76, 645.
21 N. A. Kautz and S. A. Kandel, J. Am. Chem. Soc., 2008, 130, 6908.
22 D. B. Dougherty, P. Maksymovych and J. T. Yates Jr., Surf. Sci., 2006,
600, 4484.
23 P. Maksymovych, O. Voznyy, D. B. Dougherty, D. C. Sorescu and
J. T. Yates Jr., Prog. Surf. Sci., 2010, 85, 206.
24 F. Li, L. Tang, W. Zhou and Q. Guo, J. Am. Chem. Soc., 2010,
132, 13059.
25 F. Li, L. Tang, W. Zhou and Q. Guo, Langmuir, 2010, 26, 9484.
26 G.Pawin,K.L.Wong,D.Kim,D.Sun,L.Bartels,S.Hong,T.S.Rahman,
R. Carp and M. Marsella, Angew. Chem., Int. Ed., 2008, 47, 8442.
27 K. Morgenstern, S. W. Hla and K.-H. Rieder, Surf. Sci., 2003, 523,141.
28 M.-T. Nguyen, C. A. Pignedoli and D. Passerone, Phys. Chem. Chem.
Phys., 2011, 13, 154.
29 M. Di Giovannantonio, M. El Garah, J. Lipton-Duffin, V. Meunier,
L. Cardenas, Y. Fagot Revurat, A. Cossaro, A. Verdini,
D. F. Perepichka, F. Rosei and G. Contini, ACS Nano, 2013,
7, 8190, DOI: 10.1021/nn4035684.
30 C. C. Perry, S. Haq, B. G. Frederick and N. V. Richardson, Surf. Sci.,
1998, 409, 512.
31 N. Lin, D. Payer, A. Dmitriev, T. Strunskus, C. Wo
¨ll, J. V. Barth and
K. Kern, Angew. Chem., Int. Ed., 2005, 44, 1488.
32 D. M. Rampulla, A. J. Gellman and D. S. Sholl, Surf. Sci., 2006,
600, 2171.
33 M. M. Blake, S. U. Nanayakkara, S. A. Claridge, L. C. Ferna
´ndez-Torres,
E. C. H. Sykes and P. S. Weiss, J. Phys. Chem. A, 2009, 113, 13167.
34 S. U. Nanayakkara, E. C. H. Sykes, L. C. Ferna
´ndez-Torres,
M. M. Blake and P. S. Weiss, Phys. Rev. Lett., 2007, 98, 206108.
35 M. G. Evans and M. Polanyi, Trans. Faraday Soc., 1938, 34, 11.
Fig. 3 STM movie clips demonstrating the mobility of the organometallic
intermediate, phenyl–Cu–phenyl, on the Cu surface at 80 K. The full
movie is provided in the ESI.Inset: high resolution 5 K image of a cluster
similar to the immobile structure in the lower right corner of the images.
Scale bar = 3 nm; inset = 4.79 4.45 nm
2
.
ChemComm Communication
Published on 29 November 2013. Downloaded by Tufts University on 12/12/2013 18:39:15.
View Article Online
... It has been demonstrated in literature that Ullmann coupling will be initiated immediately for halogenated precursors on the copper surface at RT, due to its relatively high reactivity. [42,43] Thus, one can infer that the dehalogenative homocoupling of Br 2 Py shall occur on Cu(1 1 1) immediately after deposition, followed by the sequential interlinking of pyrene residues with surface copper adatoms into OM intermediates. Meanwhile, each dibrominated pyrene unit also has the chance to directly bond to Cu atoms at both terminals, forming the surfacestabilized metal-pyrene residues. ...
... High-resolution STM presented inset indicates that these linear chains are constructed with bright dots coordinated in between pyrene resides, and they shall be correlated to OM species by interlinking surface Cu adatoms and pyrene residues through C-Cu-C bridges. [43,46,47] Nevertheless, the remaining of intact Br 2 Py monomers can still be discovered on Cu(1 1 1) at RT, while the coexistence of Br 2 Py monomers and OM chains is presented in Fig. S2 in the supporting information. Again, XPS analysis of the Br 3d core level at RT also shows that the majority of Br 2 Py molecules have already been debrominated, while a small percentage of monomers (18.2%) is still intact as analyzed after peak fitting, in consistence with STM observations. ...
Article
On-surface Ullmann coupling has attracted intensive attentions recently owing to its uniqueness at the tailor-made fabrication of conjugated nanostructures with high controllability. However, in-depth understanding of reaction mechanisms has not been fully established yet. Herein, symmetrical dehalogenation of 2, 7-dibromopyrene (Br2Py) on Cu(111) has been investigated in-detail via a combination of scanning tunneling microscopy, X-ray photoelectron spectroscopy, and density functional theory. First, deposition of Br2Py onto the precooled Cu(111) results in the self-assembly of intact precursors, while the formation of organometallic (OM) chains is induced on Cu(111) kept at room temperature (RT) after symmetrical dehalogenation due to the relatively high reactivity of Cu at RT. Further, it has been intriguingly discovered that symmetrically debrominated residues can be bound either to copper atoms from substrate leading the formation of close packed species, or to surface adatoms forming the Kagome-like pattern when Cu(111) is held at elevated temperatures during deposition. Nevertheless, covalent organic chains are constructed ultimately from different OM intermediates after stepwise annealing with the fingerprint of structural transition clearly identified. Based on these findings, our report provides appealing insights for the comprehensive understanding of surface Ullmann coupling mechanisms.
... [35][36][37][38][39] Sykes' group has studied the Ullmann coupling of bromobenzene on a Cu (111) surface by Scanning Tunnelling Microscopy (STM). 40 They demonstrated that the formation of biphenyl occurs at the metal surface through a mobile organometallic intermediate, containing two phenyl groups bound to a Cu atom that was extracted from the surface (Fig. 1). They could also conclude that the formation of this molecular intermediate at low temperature (160 K) is consistent with the rate limiting step for the studied reaction, being the biphenyl formation and not the Cu atom extraction from the metal surface or the formation of the organometallic intermediate, the step showing the highest energy barrier. ...
... [35][36][37][38][39] Sykes' group has studied the Ullmann coupling of bromobenzene on a Cu (111) surface by Scanning Tunnelling Microscopy (STM). 40 They demonstrated that the formation of biphenyl occurs at the metal surface through a mobile organometallic intermediate, containing two phenyl groups bound to a Cu atom that was extracted from the surface (Fig. 1). They could also conclude that the formation of this molecular intermediate at low temperature (160 K) is consistent with the rate limiting step for the studied reaction, being the biphenyl formation and not the Cu atom extraction from the metal surface or the formation of the organometallic intermediate, that step showing the highest energy barrier. ...
Chapter
Metal-based nanoparticles (MNPs) have been widely used as catalysts in different types of chemical transformations, taking advantage of their intrinsic properties, such as geometry, specific surface area, sites (edges, corners, faces, kinks, steps…) and electronic configuration, which offer a wide-ranging variety of interactions with the reagents and products of catalytic processes. In addition, both the nature of the metal and the support (often MNPs are supported on solids or immobilized in liquid phases) play a crucial role in their catalytic behavior and plausible recycling. Nevertheless, research works reporting on the organometallic interactions at the metal surface are much more limited, often due to the difficulty of accessing to convenient experimental techniques. In this contribution, an overview from an organometallic point of view is presented regarding the interactions of organic compounds (reactants or products) at the surface of metal nanoparticles based on experimental data and calculations, helping to establish structure-reactivity correlations.
... 11−21 However, factors such as friction, thermal fluctuations, intramolecular bonding, and steric effects have imposed various challenges in understanding many surface molecular machines. 11,22 To address these gaps in understanding, scanning tunneling microscopy (STM) offers the unique ability to make single-molecule measurements of molecular rotation on surfaces and to interrogate the details of electroninduced molecular motion at the nanoscale. 23−31 Thanks to this approach, there have been important breakthroughs in studying molecular machines such as electrically driven nanocars, 32 synchronized molecular motor networks, 33 and single-molecule motors. ...
Article
This paper describes a single-molecule study of N-methylbutylamine molecular rotors supported on a Cu(111) surface. It is first demonstrated that the chirality of the individual rotating molecules can be directly determined by scanning tunneling microscopy (STM) imaging and understood with density functional theory (DFT) simulations. Tunneling electrons from the STM tip are then utilized to excite vibrational modes of the molecule that drives the rotational motion. Experimental action spectra were used to demonstrate that the electrically induced rotational motion of N-methylbutylamine occurs above 360 meV, which coincides with C–H stretching vibrational modes. The measurements also reveal that, above this 360 meV threshold, the excitation occurs via a one-electron process. DFT calculations indicated that the rotation barrier is over an order of magnitude smaller, meaning that the rotor is excited via high-energy vibrational modes that then couple to the low energy rotational mode. Furthermore, by adjusting the electron flux, individual rotational motions between the six different stable orientations of the molecule on the Cu(111) surface were monitored in real time. It was found that, for most STM tips used to electrically excite the rotors, the rotation of one enantiomer is faster than the other. This confirms an earlier report that STM tips can themselves be chiral and illustrates the fact that diastereomerism arising from a chiral STM tip interacting with a chiral molecule can lead to significant physical differences in the rotation rates of R versus S molecular rotors. This result has ramifications for interpreting the data from experiments where nanoscale electrical contacts to chiral molecules are made in devices like break junctions and scanning probe experiments.
Article
Full-text available
A new way of demetalating Ullmann organometallic aryl intermediates is proposed that uses charging rather than heating conditions. Ab initio molecular dynamics simulations show that certain aryl organosilver and organocopper intermediates (MPh2, with M=Cu, Ag and Ph=phenyl group) spontaneously demetalate even starting with zero velocities upon the oxidative removal of one electron. The oxidative demetalation is driven by the loss of electron density in the interatomic C−M region and leads to a biphenyl molecule with a η‐coordinated nearby M atom. The main advantage of this dry redox demetalation process is that it avoids the use of high temperatures which have deleterious effects on the yields. The method does not compromise the thermal stability of the end product and reduces the chances of uncontrolled side reactions. The demetalation of oxidized MPh2 is predicted to occur spontaneously in the gas phase and on an inert surface. A possible experimental setup is proposed to test this idea in the widely‐used Ullmann reaction for the controlled on‐surface synthesis of new C−C bonds. The reduction‐induced planarization of the neutral MPh2 molecule is reversible and could be used as an electro‐mechanical nano‐switch. The neutral and anionic compounds are predicted to be locally aromatic and dynamically stable. For bimetallic aryl intermediates (M2Ph3), the irreversible demetalation occurs upon the removal of two electrons leading to the dication.
Article
Various methodologies have been well established to construct self-assembled structures on surfaces that are aesthetic and eye-catching. How to practically apply these self-assemblies still remains a great challenge. In particular, how to develop the surface molecular self-assembly into a new and applicable strategy to control on-surface reactions plays a crucial role in the construction of covalently bonded structures on surfaces. In this chapter, recent progress in the development of such a self-assembly strategy is overviewed. After a brief description of the fundamentals in surface reaction kinetics, a series of typical proof-of-principle case studies are summarised, focusing on the application of the self-assembly strategy to control on-surface reactions. Such a strategy may be exploited as an efficient bottom-up approach to constructing covalently bonded and thermally stable structures that are urgently needed in nanoscience and nanotechnology. In specific, the emphasis is to utilise the molecular self-assembly strategy to steer on-surface reactions via mediations of the reaction pathway, selectivity, and site. Some remaining challenges and perspectives relating to the self-assembly strategy are also provided for future explorations.
Article
In on-surface chemistry, the efficient preparation of metal-organic hybrids is regarded as a primary path to mediate controlled synthesis of well-ordered low-dimensional organic nanostructures. The fundamental mechanisms in forming these hybrid structures, however, are so far insufficiently explored. Here, with scanning tunneling microscopy, we studied the bonding behavior of the adsorbed phenol derivatives with different molecular lengths. We reveal that shorter molecules favor bonding with extracted metal adatoms and result in metal-organic hybrids, whereas longer molecules prefer to bond with lattice metal atoms. The conclusions are further confirmed by density functional theory calculations.
Article
We provide insight into surface-catalyzed dehalogenative polymerization, analyzing the organometallic intermediate and its evolution into planar polymeric structures. A combined study using scanning tunneling microscopy (STM), x-ray photoelectron spectroscopy (XPS), low energy electron diffraction (LEED), near-edge x-ray absorption fine structure (NEXAFS) spectroscopy and first-principles calculations unveils the structural conformation of substrate-bound phenylene intermediates generated from 1,4-dibromobenzene precursors on Cu(110), showing the stabilizing role of the halogen. The appearance of covalently bonded conjugated structures is followed in real time by fast-XPS measurements (with an acquisition time of 2 s per spectrum and heating rate of 2 K/s), showing that the detaching of phenylene units from the copper substrate and subsequent polymerization occur upon annealing above 460 ± 10 K.
Article
Chemisorption of organosulfur molecules, such as alkanethiols, arenethiols and disulfide compounds on gold surfaces and their subsequent self-organization is the archetypal process for molecular self-assembly on surfaces. Owing to their ease of preparation and high versatility, alkanethiol self-assembled monolayers (SAMs) have been widely studied for potential applications including surface functionalization, molecular motors, molecular electronics, and immobilization of biological molecules. Despite fundamental advances, the dissociative chemistry of the sulfur headgroup on gold leading to the formation of the sulfur–gold anchor bond has remained controversial. This review summarizes the recent progress in the understanding of the geometrical and electronic structure of the anchor bond. Particular attention is drawn to the involvement of gold adatoms at all stages of alkanethiol self-assembly, including the dissociation of the disulfide (S–S) and hydrogen-sulfide (S–H) bonds and subsequent formation of the self-assembled structure. Gold adatom chemistry is proposed here to be a unifying theme that explains various aspects of the alkanethiol self-assembly and reconciles experimental evidence provided by scanning probe microscopy and spectroscopic methods of surface science. While several features of alkanethiol self-assembly have yet to be revisited in light of the new adatom-based models, the successes of alkanethiol SAMs suggest that adatom-mediated surface chemistry may be a viable future approach for the construction of self-assembled monolayers involving molecules which do not contain sulfur.
Article
The chemisorption of benzoate on a Cu(110) crystal at room temperature was studied using low temperature scanning tunneling microscopy. STM images, obtained at 5K for low benzoate coverage, show isolated surface species that consist of a single Cu adatom stabilizing two benzoate molecules in a flat orientation. These species are discussed in relation to other known metal-organic surface compounds. At higher coverage the 4-315overlayer, called the α-phase, was also observed at 5K and found to contain features attributable to two Cu adatoms associated with two pairs of non-equivalent benzoate species. The observed topographic features are used to suggest refinements of the structural model of the ordered α-phase overlayer.
Article
Using reflection absorption infrared spectroscopy (RAIRS), the coverage-dependent reorientation of the benzoate species on the (110) and (111) faces of copper is compared and contrasted. Whereas on Cu(110) benzoate reorients from a flat-lying to an upright orientation with increasing coverage, on Cu(111), at all coverages, benzoate is aligned normal to the surface. The formation of periodic, flat-lying copper–benzoate structures has been attributed to the availability of metal adatoms, which differs dramatically between the (111) and (110) faces. We discuss the face specificity of molecular orientation by comparing calculated formation energies of adatom vacancies from ledges and kink sites on (100), (110) and (111) faces. Further support for this model is given by the evaporation of sodium, either by pre- or post-dosing, onto low-coverage benzoate/Cu(111), which induces benzoate to convert from a perpendicular to a parallel orientation. Likewise, coevaporation of Cu while dosing benzoic acid onto the Cu(111) surface also results in a majority of flat-lying benzoate species. Finally, for adsorption on the p(2×1)O/Cu(110) reconstruction, benzoate occurs only as the upright species, which is consistent with reducing the copper mobility and availability on the (110) face. We therefore suggest the possible role of metal adatoms as a new mechanism in controlling adsorbate orientation and therefore face specificity in surface reactions.
Article
The rates of Br atom diffusion on several single crystalline Cu surfaces have been studied because of the potential impact of Br diffusion on the selectivity of alkyl bromide surface chemistry on Cu. Density functional theory (DFT) has been used to study the diffusion of isolated bromine atoms on a flat Cu surface, Cu(1 1 1), two Cu surfaces with straight steps, Cu(2 2 1) and Cu(5 3 3), and two kinked Cu surfaces, Cu(6 4 3) and Cu(5 3 1). Bromine diffusion is rapid on the flat Cu(1 1 1) surface with a barrier of DeltaEdiff = 0.06 eV and a hopping frequency of nu = 4.8 × 1010 s-1 at 150 K. On the stepped and kinked surfaces the effective diffusion barriers lie in the range DeltaEdiff = 0.18 0.31 eV. Thus the rates of diffusion are many orders of magnitude slower on stepped and kinked Cu surfaces than on the Cu(1 1 1) surface. Nonetheless, at temperatures relevant for alkyl bromide debromination on Cu surfaces, bromine atoms remain sufficiently mobile that they can explore all available binding sites on the timescale of the debromination reaction.
Article
Low-temperature scanning tunnelling microscopy reveals seven coexisting structures of iodobenzene (IC6H5) adsorbed on Cu(111) at ≈55 K. Only the least dense structure reflects the threefold symmetry of the surface. The other structures show p2-symmetry. In the densest structure molecules adsorb with their π system perpendicular to the surface. We identify as a common driving force for ordering the tendency of the phenyl rings (C6H5) to encapsulate the iodine.
Article
A hexagonal macrocycle consisting of 18 phenylene units (hyperbenzene) was synthesized on a Cu(111) surface in ultrahigh vacuum by Ullmann coupling of six 4,4''-dibromo-m-terphenyl molecules. The large diameter of 21.3 Å and the ability to assemble in arrays makes hyperbenzene an interesting candidate for a nanotrough that could enclose metallic, semiconducting, or molecular quantum dots.
Article
In two sets of experiments built on the work of Brian Bent, we imaged benzene molecules and phenyl radicals on the Cu{111} surface at low coverage and low temperature.1 The experiments allowed us to see how mobile molecules on surfaces probe the electronic structure of the surface. Bare terraces of the Cu{111} surface appear extremely flat in scanning tunneling microscope images. We are thus able to image the perturbations to the electronic structure caused by steps, defects, and adsorbates. These perturbations determine the structure and dynamics of the adsorbates. Benzene forms ordered structures along step edges at even very low coverages. Adsorbed phenyl radicals form complex pairs, aligned so as to be able to couple to form biphenyl at higher temperature. We discuss the chemical consequences of such substrate-mediated interactions.
Article
Adsorption of the brominated aromatic molecule 1,3,5-tris(4-bromophenyl)benzene on different metallic substrates, namely Cu(111), Ag(111), and Ag(110), has been studied by variable-temperature scanning tunneling microscopy (STM). Depending on substrate temperature, material, and crystallographic orientation, a surface-catalyzed dehalogenation reaction is observed. Deposition onto the catalytically more active substrates Cu(111) and Ag(110) held at room temperature leads to cleavage of carbon−bromine bonds and subsequent formation of protopolymers, i.e., radical metal coordination complexes and networks. However, upon deposition on Ag(111) no such reaction has been observed. Instead, various self-assembled ordered structures emerged, all based on intact molecules. Also sublimation onto either substrate held at 80 K did not result in any dehalogenation, thereby exemplifying the necessity of thermal activation. The observed differences in catalytic activity are explained by a combination of electronic and geometric effects. A mechanism is proposed, where initial charge transfer from substrate to adsorbate, followed by subsequent intramolecular charge transfer, facilitates C−Br bond homolysis.