Benoît Goossens

Cardiff University | CU · School of Biosciences

With many non-human primates (NHPs) showing continued population decline, there is an ongoing need to better understand their ecology and conservation threats. One such threat is the risk of disease, with various bacterial, viral and parasitic infections previously reported to have damaging consequences for NHP hosts. Strongylid nematodes are one o...

Multilevel societies (MLS), which are characterized by two or more levels of social organization, are among the most complex primate social systems. MLS have only been recorded in a limited number of primates, including humans. The aim of this study was to investigate whether proboscis monkeys (Nasalis larvatus) form MLS in Sabah, Malaysia, and to...

Wildlife and preservation research activities in the tropical forest of Sabah, Malaysia, can generate a wide variety of data. However, each research activity manages its data independently. Since these data are disparate, gaining unified access to them remains a challenge. We propose the Forest Observatory Ontology (FOO) as a basis for integrating...

Agricultural expansion in Southeast Asia has converted most natural landscapes into mosaics of forest interspersed with plantations, dominated by the presence of generalist species that benefit from resource predictability. Dietary shifts, however, can result in metabolic alterations and the exposure of new parasites that can impact animal fitness...

Wildlife and preservation research activities in the tropical forest of Sabah, Malaysia, can generate a wide variety of data. However, each research activity manages its data independently. Since these data are disparate, gaining unified access to them remains a challenge. We propose the Forest Observatory Ontology (FOO) as a basis for integrating...

Previously, we isolated a novel lactic acid bacteria species (Lactobacillus nasalidis) from the fresh forestomach contents of a captive proboscis monkey (Nasalis larvatus) in a Japanese zoo. In this study, we isolated two strains of L. nasalidis from the freeze-dried forestomach contents of a wild proboscis monkey inhabiting a riverine forest in Ma...

Recent technological advances have enabled comprehensive analyses of the previously uncharacterized microbial community in the gastrointestinal tracts of numerous animal species; however, the gut microbiota of several species, such as the endangered proboscis monkey (Nasalis larvatus) examined in this study, remains poorly understood. Our study sou...

Sustainable development cannot be achieved without conservation of biodiversity. The conservation of elephant habitat in Asia can help achieve sustainability targets

Biophysical and socio-cultural factors have jointly shaped the distribution of global biodiversity, yet relatively few studies have quantitatively assessed the influence of social and ecological landscapes on wildlife distributions. We sought to determine whether social and ecological covariates shape the distribution of a cultural keystone species...

Multilevel societies (MLS), which are characterized by two or more levels of social organization, are among the most complex primate social systems. MLS have only been recorded in a limited number of primates, including humans. The aim of this study was to identify a possible MLS of proboscis monkeys ( Nasalis larvatus ) in Sabah, Malaysia, and to...

This chapter is a postprint that provides an overview of the bearded pig (Sus barbatus) in Sabah, including background, taxonomy, natural history, cultural significance, distribution, and conservation. The chapter also includes a status update of the impact of African Swine Fever (ASF) on local collapse of bearded pig populations across Sabah in 20...

Habitat loss, habitat degradation and poaching threaten the survival of large mammals in Southeast Asia. Studies on these threats tend to focus on small spatial scales (i.e. a protected area), precluding region-wide species assessments that can inform conservation management. Using existing camera trap data, we constructed occupancy models to under...

Similar to other apex predator species, populations of mainland (Neofelis nebulosa) and Sunda (Neofelis diardi) clouded leopards are declining. Understanding their patterns of genetic variation can provide critical insights on past genetic erosion and a baseline for understanding their long-term conservation needs. As a step toward this goal, we pr...

In animal husbandry, diets should help in maintaining a healthy body condition, support reproduction, and promote species-specific longevity. It is recommended to feed folivorous primates kept in zoos a high-fiber diet, i.e., leaves, although satisfying such a requirement is challenging in temperate regions because it is difficult to obtain fresh l...

Protected areas (PAs) are a cornerstone of global conservation strategies. PAs, however, are not equally effective for all threatened taxa, and it is important to understand taxa‐specific effectiveness of PAs networks. In this study, we evaluate the role of the PAs network on the protection of Asian elephants Elephas maximus and their habitats in S...

Various global-scale proposals exist to reduce the loss of biological diversity. These include the Half-Earth and Whole-Earth visions that respectively seek to set aside half the planet for wildlife conservation or to diversify conservation practices fundamentally and change the economic systems that determine environmental harm. Here we assess the...

This paper presents ForestQB, a SPARQL query builder, to assist Bioscience and Wildlife Researchers in accessing Linked-Data. As they are unfamiliar with the Semantic Web and the data ontologies, ForestQB aims to empower them to benefit from using Linked-Data to extract valuable information without having to grasp the nature of the data and its und...

Biophysical and socio-cultural factors have jointly shaped the distribution of global biodiversity, yet relatively few studies have quantitatively assessed the influence of social and ecological landscapes on wildlife distributions. We sought to determine whether social and ecological covariates shape the distribution of a cultural keystone species...

Vocal intervention is a triadic social interaction, where a third party responds vocally to a conflict between group members, minimizing the costs of aggression in response to the intervention. Because there is little information on vocal third-party intervention in nonhuman mammals, we investigated whether adult male proboscis monkeys use the bray...

Primate ecotourism is a fast-growing tourism sector that may have a negative effect on wildlife. In riparian areas, tourists can conveniently reach primates via motor boats, but no study has directly examined whether such boats cause stress in primates. Our goal was to test whether the approach of a motor boat induces stress-related and other behav...

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In the Kinabatangan floodplain, Sabah, Malaysian Borneo, oil palm and settlements have reduced and fragmented lowland tropical forests, home to around 200 endangered Bornean elephants ( Elephas maximus borneensis ). In this region, elephants range within forests, oil palm and community areas. The degree to which elephants are using these areas rema...

Recently, several diurnal nonhuman anthropoids have been identified displaying varying degrees of nocturnal activity, which can be influenced by activity "masking effects"-external events or conditions that suppress or trigger activity, temporarily altering normal activity patterns. Environmental masking characteristics include nocturnal temperatur...

Tropical forest reserves have conservation value for terrestrial mammals and are threatened by anthropogenic pressures, especially conversion to other land-use types. To assess mammalian biodiversity of forest reserves in Sabah, Borneo, we used camera trapping data to estimate species richness, beta diversity, phylogenetic and functional diversity...

We conducted an exploratory serological survey to evaluate the exposure of Bornean wild carnivores to several viruses common to domestic felids, at interface areas between protected forest and industrial agriculture in the Kinabatangan floodplain (Sabah, Malaysia). Blood samples, collected from wild carnivores (n = 21) and domestic cats (n = 27), w...

Conservation strategies are rarely systematically evaluated, which reduces transparency, hinders the cost-effective deployment of resources, and hides what works best in different contexts. Using data on the iconic and critically endangered orangutan (Pongo spp.), we developed a novel spatiotemporal framework for evaluating conservation investments...

The Asian water monitor lizard, Varanus salvator, is one of the largest predators in Southeast Asia which persists in human-dominated landscapes and, as such, is a suitable model to understand the behavioral plasticity of generalists in anthropogenic landscapes. We used Local Convex Hull with adaptive algorithm to estimate the home range size of 14...

The flat-headed cat Prionailurus planiceps is one of the least studied cats worldwide, with little to no research and conservation efforts in place. This cat is listed as Endangered on the IUCN Red List, as their habitat and population continue to decline. It can be found near freshwater sources, but the loss and degradation of the habitat has resu...

In Borneo, oil palm plantations have replaced much of natural resources, where generalist species tend to be the principal beneficiaries, due to the abundant food provided by oil palm plantations. Here, we analyse the distribution of the Asian water monitor lizard (Varanus sal-vator) population within an oil palm-dominated landscape in the Kinabata...

Patterns and practices of agricultural expansion threaten the persistence of global biodiversity. Wildlife species surviving large-scale land use changes can be exposed to a suite of contaminants that may deleteriously impact their health. There is a paucity of data concerning the ecotoxicological impacts associated with the global palm oil (Elaeis...

1. Land-use change and political–economic shifts have shaped hunting patterns globally, even as traditional hunting practices endure across many local socio-cultural contexts. The widespread expansion of oil palm cultivation, and associated urbanization, alters land-use patterns, ecological processes, economic relationships, access to land and soci...

In an effort to strengthen global capacity to prevent, detect, and control infectious diseases in animals and people, the United States Agency for International Development’s (USAID) Emerging Pandemic Threats (EPT) PREDICT project funded development of regional, national, and local One Health capacities for early disease detection, rapid response,...

Small populations are often exposed to high inbreeding and mutational load that can increase the risk of extinction. The Sumatran rhinoceros was widespread in Southeast Asia, but is now restricted to small and isolated populations on Sumatra and Borneo, and most likely extinct on the Malay Peninsula. Here, we analyse 5 historical and 16 modern geno...

Parasites are important components of ecosystems, influencing trophic networks, competitive interactions and biodiversity patterns. Nonetheless, we are not nearly close to disentangling their complex roles in natural systems. Southeast Asia falls within global areas targeted as most likely to source parasites with zoonotic potential, where high rat...

On 7 th March 2020, L. sumatrana was sighted and video recorded in an oil palm plantation within the Lower Kinabatangan Wildlife Sanctuary (LKWS). This was the first documented sighting of L. sumatrana within the LKWS, which suggests that this endangered otter species still persists within the degraded landscape. In addition, on the 8 th September...

Misconceptions about species’ ecological preferences compromise conservation efforts. Whenever people and elephants share landscapes, human–elephant conflicts (HEC) occur in the form of crop raiding, elephant attacks on people and retaliatory actions from people on elephants. HEC is considered the main threat to the endangered Asian elephant Elepha...

Context Agricultural land use is expanding and is a major driver of the biodiversity crisis. Land use planning initiatives seeking to optimize wildlife conservation are hindered by a lack of baseline data quantifying species’ tolerance to human-modified landscapes. Objectives We explored the influence of landscape characteristics on the fine-scale...

Widespread and unregulated hunting of ungulates in Southeast Asia is resulting in population declines and localised extinctions. Increased access to previously remote tropical forest following logging and changes in land-use facilitates hunting of elusive wild cattle in Borneo, which preferentially select secluded habitat. We collated the first pop...

Using data on the iconic orangutan (Pongo spp.), we developed a novel spatiotemporal framework for evaluating conservation investments. We show that around USD 1 billion was invested between 1999 and 2019 into orangutan conservation by governments, non-governmental organizations, companies and communities. Broken down by allocation to different con...

Agricultural development is a major threat to global biodiversity, and effective conservation actions are crucial. Physiological repercussions of life alongside human-modified landscapes can undermine adaptable species' health and population viability; however, baseline data are lacking for many wildlife species. We assessed the physiological statu...

Background: Constraints in migratory capabilities, such as the disruption of gene flow and genetic connectivity caused by habitat fragmentation, are known to affect genetic diversity and the long-term persistence of populations. Although negative population trends due to ongoing forest loss are widespread, the consequence of habitat fragmentation...

The uniquely enlarged noses of male proboscis monkeys are prominent adornments, and a sexually selected male trait. A recent study showed significant correlations among nose, body, and testis sizes and clear associations between nose size and the number of females in a male's harem. However, to date, the analyses of other common male traits, i.e.,...

Ancient DNA has significantly improved our understanding of the evolution and population history of extinct megafauna. However, few studies have used complete ancient genomes to examine species responses to climate change prior to extinction. The woolly rhinoceros (Coelodonta antiquitatis) was a cold-adapted megaherbivore widely distributed across...

Despite being one of the most biodiverse regions in the world, not much is known concerning the ecology of the otters on Borneo. We conducted a study to document the activity patterns of the smooth-coated otter, Lutrogale perspicillata, in increasingly disturbed and fragmented habitats in the Lower Kinabatangan Wildlife Sanctuary (LKWS), located in...

Endangered Bornean elephants are severely threatened by ongoing habitat transformation and increasing levels of human-elephant conflict. Understanding how elephants move across intact and transformed landscapes, as well as within them, is therefore of vital importance for the successful implementation of conservation management initiatives. We comb...

Males of Enterobius (Colobenterobius) serratus Hasegawa et al., 2003 (Nematoda: Oxyuridae) are described for the first time based on six individuals collected from the feces of proboscis monkeys, Nasalis larvatus, in the Lower Kinabatangan Wildlife Sanctuary, Sabah, Malaysian Borneo. The males show identical cephalic morphology to females, being re...

The uniquely enlarged noses of male proboscis monkeys (Nasalis larvatus) are prominent adornments, and a sexually selected male masculine trait, as recently revealed by the significant correlations among nose, body, and testis sizes and the clear association between nose size and the number of females in a male's harem. However, till date, the anal...

Landscape features may restricting dispersal and gene flow, and increase demographic isolation among sub-populations. In addition, landscape features may represent potential dispersal barriers depending on species vagility. To predict the persistence of populations and to formulate adequate conservation measures it is essential to understand the ab...

The behaviour of cryptic tropical forest ungulates that are not identifiable from unique coat colour and patterns often impedes detectability and investigations of population density, which underpin conservation plans. The shy and endangered Bornean banteng has a declining trend, but quantifying this requires sufficient detections to estimate robus...

Frugivorous vertebrates such as primates are important dispersal agents in tropical forests, although the role of folivorous colobines is generally not considered. However, recent studies reported seed dispersal by endo- and epizoochory in colobine primates, including the proboscis monkey (Nasalis larvatus), suggesting that the role colobines play...

Habitat prioritization and corridor restoration are important steps for reconnecting fragmented habitats and species populations, and spatial modelling approaches are useful in identifying suitable habitat for elusive tropical rainforest mammals. The Endangered Bornean banteng Bos javanicus lowi , a wild bovid endemic to Borneo, occurs in habitat t...

Designed as a new method to facilitate the reintroduction and post-release monitoring of orangutans and other apes, implanted radio-telemetry (IRT) was developed and first deployed in 2009. Since that time, it has been necessary to collate and review information on its uptake and general efficacy to inform its ongoing development and that of other...

Land-use changes can impact infectious disease transmission by increasing spatial overlap between people and wildlife disease reservoirs. In Malaysian Borneo, increases in human infections by the zoonotic malaria Plasmodium knowlesi are hypothesised to be due to increasing contact between people and macaques due to deforestation. To explore how mac...

Strongyles are commonly reported parasites in studies of primate parasite biodiversity. Among them, nodule worm species are often overlooked as a serious concern despite having been observed to cause serious disease in nonhuman primates and humans. In this study, we investigated whether strongyles found in Bornean primates are the nodule worm Oesop...

Logging causes soil compaction and alters the vegetation structure and plant diversity, and ungulates must adapt to modified conditions if they are to survive. We investigated the impact of logging upon the foraging ecology of the Bornean banteng using camera traps and botanical surveys. General linear models were used to explore the effects of sit...

Context The Sunda clouded leopard is vulnerable to forest loss and fragmentation. Conservation of this species requires spatially explicit evaluations of the effects of landscape patterns on genetic diversity, population size and landscape connectivity. Objectives We sought to develop predictions of Sunda clouded leopard population density, geneti...

The Endangered proboscis monkey Nasalis larvatus is endemic to the island of Borneo. Habitat loss is a major threat to this species, and an understanding of long-term demographic trends is crucial for its conservation. We assessed the population trends and group sizes of proboscis monkeys over 10 years in the Lower Kinabatangan floodplain in Sabah,...

As large areas of forest are lost throughout the tropics, prime habitat of many species decline and become fragmented. The island of Borneo is a prime example, with accelerated clearing of forests primarily for oil palm expansion. Borneo is recognized as an important stronghold for the conservation of the sun bear (Helarctos malayanus), but it is u...

Lemuricola (Protenterobius) nycticebi is the only pinworm species known to infect strepsirrhine primates outside Africa, and the only pinworm species yet described in slow lorises. Here, we provided a detailed morphological comparison of female and male worms, and a rst description of fourth-stage larvae collected from free-living slow lorises (Nyc...

Limestone deposits on Borneo exist as hundreds of relatively small, isolated hills in which numerous caves were formed. These caves constitute unique, highly biodiverse, and extremely vulnerable tropical habitats. Cave-adapted organisms live under conditions of permanent darkness and constant temperature. Thus, they are strongly and irreversibly ad...

Reducing the size of food particles is crucial for herbivores. Seasonal dietary changes are known to influence animals’ chewing efficiency. Proboscis monkeys (Nasalis larvatus) are foregut fermenters, with a high chewing efficiency allowing them to achieve very fine faecal particles. In this study, we investigated how proboscis monkeys’ chewing eff...

Niche differentiation, the partitioning of resources along one or more axes of a species’ niche hyper-volume, is widely recognised as an important mechanism for sympatric species to reduce interspecific competition and predation risk, and thus facilitate co-existence. Resource partitioning may be facilitated by behavioural differentiation along thr...

Bar chart showing the optimal scaling of habitat variables in Bornean felids. (PDF)

Histogram of the frequency of coefficient of temporal overlap (Δ1 and Δ4) values between Bornean felids and all other species and species groups (n = 58). a. Sunda clouded leopard males; b. Sunda clouded leopard females; c. bay cat; d. marbled cat; e. leopard cat. The 5th and 95th percentiles of the Δ1 and Δ4 distribution for each felid are shown i...

Details of the eight forest and two oil palm plantation study areas in Sabah, Malaysian Borneo. (PDF)

Covariates used in the multi-scale habitat modelling of Bornean felid's occurrence in Sabah, including variable names, metrics calculated, and data sources. (PDF)

Table of variables used in the felid/candidate prey co-occurrence all-subsets modelling and the felid/candidate prey temporal activity overlap analysis, showing variable description, number of independent photographic records for each species/group of species. (PDF)

Scaling plots of AICc values and coefficient values for relationships between Bornean felid species’ occurrence and a range of predictor habitat variables cover type across 7 spatial scales. Spatial scales with the lowest AICc were deemed to be optimal, and used for further analysis. (PDF)

Details of camera trap survey protocols for surveys of eight forest areas and two palm oil plantations in Sabah, Malaysian Borneo. (PDF)

Results of univariate logistic regressions to assess the relative importance of habitat variables in predicting Bornean felid occurrence, showing optimal scale of each habitat variable. Variables showing p values <0.2 were used in the multivariate analyses. (PDF)

Table of overlaps of temporal activity patterns between Bornean wild cat species pairs and between Bornean wild cats and their potential prey species, as estimated by kernel density estimates. The coefficients of overlap (Δ1 and Δ4) are accompanied by the upper and lower values of the 95% confidence limits. (PDF)

Forests on tropical floodplains across Southeast Asia are being converted to oil palm plantations. Preserving natural riparian forest corridors along rivers that pass through oil palm plantations has clear benefits for ecological conservation, but these corridors (also called "buffers") use land that is potentially economically valuable for agricul...

Foregut fermentation is well known to occur in a wide range of mammalian species and in a single bird species. Yet, the foregut microbial community of free‐ranging, foregut‐fermenting monkeys, i.e., colobines, has not been investigated so far. We analyzed the foregut microbiomes in four free‐ranging proboscis monkeys (Nasalis larvatus) from two dif...

Identifying the consequences of tropical forest degradation is essential to mitigate its effects upon forest fauna. Large forest-dwelling mammals are often highly sensitive to environmental perturbation through processes such as fragmentation, simplification of habitat structure, and abiotic changes including increased temperatures where the canopy...

Description of logging methods. Four different methods of logging used in Sabah (Malaysia Borneo) within tropical dipterocarp forests over the past six decades up until present-day: conventional, traditional and newer Reduced Impact Logging (RIL) techniques. Traditional logging methods are more destructive and result in heavy impaction of the subst...

GLM estimates of bootstrapped models. GLMs constructed to obtain two-hourly estimates and 95% confidence intervals for activity patterns of Bornean banteng, ambient temperature, activity budgets (grazing, travelling and other behaviours) and habitat use (Old logging roads, open areas, forest trails and active access roads) in three regenerating for...