BRAC Institute of Governance and Development (BiGD) at BRAC University
Question
Asked 16th Nov, 2021
How to download VCF mutation file for TCGA data in R studio?
Hi,
I am working on TCGA mutation data. I want to download VCF files for some specific TCGA data in R studio for further analysis. Please suggest me how I can do that.
Thank you.
All Answers (3)
"Genomic Variants with Bioconductor" https://rockefelleruniversity.github.io/RU_GenomicVariants/
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Uppsala University (UU) & Swedish University of Agricultural Sciences (SLU)
I don't clearly understand the question. Do you mean how to get the data out of the portal or how to analyze? Download data in RStudio sounds not like a problem, because it odes not matter if you download in RStudio or just import the file if it is already downloaded by any other means. The question could be how to download data from TCGA. For that you have to follow the procedure of the portal. First login, get the data in your cart and download. Its quiet simple.
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