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Two mutations predicted to cause alternative splicing. 

Two mutations predicted to cause alternative splicing. 

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The molecular basis of Glanzmann thrombasthenia (GT) was studied in 40 families from southern India. Of 23 identified mutations (13 in the alphaIIb (ITGA2B) gene and 10 in the beta3 (ITGB3) gene), 20 were novel and three were described previously. Three mutations in the beta3 gene-p.Leu143Trp (Leu117Trp), p.Tyr307Stop (Tyr281Stop), and p.Arg119Gln...

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... and splicing of mRNA have been extensively and Baralle, 2004], the effect of a lack of a stop codon was investigated in this study. Reverse transcription of plateletderived mRNA and amplification of a cDNA fragment encompassing exons 27-29 were performed and yielded two PCR products: a major product of 216 bp and a minor product of 323 bp ( Fig. 2A). Nucleotide sequence analysis of the isolated major PCR product revealed skipping of exon 28, whereas the length of the minor product was consistent with splicing-in of exon 28. ...
Context 2
... acceptor splice site precedes the five intronic nucleotides (aggtgag). Thus, theoretically, two splicing alternatives leading to identical mRNA sequences are possible. According to the annotated splicing pattern, the GTGAG sequence belongs to the 3 0 end of exon 9, while according to Genscan prediction, it belongs to the 5 0 end of exon 10 (Fig. 2B, upper panel). If the annotated exon definition is correct, then the 1261G4A mutation occured 5 bp upstream from the 3 0 end of exon 9, coding for Val395Met. If, however, the Genscan prediction is correct, then the 1261G4A mutation occurred at the donor splice site of IVS 9, giving rise to the formation of an extra exon of 28 bp within IVS 9 and the ...
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... then the 1261G4A mutation occured 5 bp upstream from the 3 0 end of exon 9, coding for Val395Met. If, however, the Genscan prediction is correct, then the 1261G4A mutation occurred at the donor splice site of IVS 9, giving rise to the formation of an extra exon of 28 bp within IVS 9 and the addition of five nucleotides to the 5 0 end of exon 10 (Fig. 2B, lower panel). Thus, the predicted alternatively spliced mRNA is 33 nucleotides longer than the wildtype mRNA and codes for 11 extra amino acid residues in addition to the Val395Met substitution. Interestingly, an adjacent c.1260G4A silent mutation (located in the last nucleotide of exon 9 according to Genscan prediction) was previously shown to ...

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... Leu143Trp (c.428T > G, rs121918452) identified in the siblings pt.13 and pt.14 affects the protein domain of the beta subunit in the N-terminal region. This results in the intracellular retention of misfolded αIIbβ3 heterodimers and has been described in a Pakistani child whose platelets express less than 10% of the total amount of αIIbβ3 [14] and in the Indian population [15]. Peretz et al suggest that this variant is an Indian founder mutation [15]. ...
... This results in the intracellular retention of misfolded αIIbβ3 heterodimers and has been described in a Pakistani child whose platelets express less than 10% of the total amount of αIIbβ3 [14] and in the Indian population [15]. Peretz et al suggest that this variant is an Indian founder mutation [15]. Interestingly, the patient who was investigated in this study has parents who migrated from India to Pakistan. ...
... Leu143Ser (c.428T > C) identified in pt. 15, an alteration at the same position has not been described so far and therefore, we classified this variant as likely pathogenic. Grantham score between the wild-type amino acid leucine (hydrophobic) and serine (polar uncharged) is 145 (0-215) and therefore higher than in exchange with tryptophan. ...
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Glanzmann's thrombasthenia (GT) is a rare bleeding disorder characterized by spontaneous mucocutaneous bleeding. The disorder is caused by quantitative or qualitative defects in integrin αIIbβ3 (encoded by ITGA2B and ITGB3) on the platelet and is more common in consanguineous populations. However, the prevalence rate and clinical characteristics of GT in nonconsanguineous populations have been unclear. We analyzed 97 patients from 93 families with GT in the Han population in China. This analysis showed lower consanguinity (18.3%) in Han patients than other ethnic populations in GT‐prone countries. Compared with other ethnic populations, there was no significant difference in the distribution of GT types. Han females suffered more severe bleeding and had a poorer prognosis. We identified a total of 43 different ITGA2B and ITGB3 variants, including 25 previously unidentified, in 45 patients. These variants included 14 missense, four nonsense, four frameshift, and three splicing site variants. Patients with the same genotype generally manifested the same GT type but presented with different bleeding severities. This suggests that GT clinical phenotype does not solely depend on genotype. Our study provides an initial, yet important, clinical and molecular characterization of GT heterogeneity in China.
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Background: Studies on the inherited bleeding disorder, Glanzmann thrombasthenia (GT), have helped define the role of the αIIbβ3 integrin in platelet aggregation. Stable bent αIIbβ3 undergoes conformation changes on activation allowing fibrinogen binding and its taking an extended form. The αIIb genu assures the fulcrum of the bent state. Our goal was to determine how structural changes induced by missense mutations in the αIIb genu define GT phenotype. Methods: Sanger sequencing of ITGA2B and ITGB3 in the index case followed by in silico modeling of all known GT-causing missense mutations extending from the lower part of the β-propeller, and through the thigh and upper calf-1 domains. Results: A homozygous c.1772A>C transversion in exon 18 of ITGA2B coding for a p.Asp591Ala substitution in an interconnecting loop of the lower thigh domain of αIIb in a patient with platelets lacking αIIbβ3 led us to extend our in silico modeling to all 16 published disease-causing missense variants potentially affecting the αIIb genu. Modifications of structuring H-bonding were the major cause in the thigh domain although one mutation gave mRNA decay. In contrast, short-range changes induced in calf-1 appeared minor suggesting long-range effects. All result in severe to total loss of αIIbβ3 in platelets. The absence of mutations within a key Ca2+-binding loop in the genu led us to scan public databases; three potential single allele variants giving major structural changes were identiffied suggesting that this key region is not protected from genetic variation. Conclusions: It appears that the αIIb genu is the object of stringent quality control to prevent platelets from circulating with activated and extended integrin.
... These diverse genetic defects result in deficiency or dysfunction of the GPIIb/IIIa complex on platelets that were presented as qualitative and/or quantitative abnormalities of aIIbb3 integrin [1,4,5]. The first mutation causing Glanzmann's thrombasthenia was described by Bray and Shuman in 1990, and more than 150 mutations have been reported since then [9]. Currently, Human Gene Mutation Database (HGMD) lists more than 250 and 150 mutations in aIIb and b3 genes, respectively [10]. ...
... Spectrophotometer (Thermo Fisher Scientific, Waltham, Massachusetts, USA). Due to large number of ITGA2B and ITGB3 exons, first, all exons and splice sites of ITGA2B (30 exons) and ITGB3 (15 exons) were amplified using PCR with a high-fidelity Taq polymerase, and the primers which were derived from Nair and Mitchell studies (Table 1) [9,15]. The PCR mixture consisted of 1.5-ml DNA sample, 46.5-ml Taq DNA polymerase 2Â master mix (Ampliqon, Amsterdam, Netherlands), and 1 ml of each forward and reverse primers. ...
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: Quantitative and/or qualitative defects of the platelet membrane glycoprotein IIb/IIIa complex lead to the clinical entity of Glanzmann's thrombasthenia. A large variety of mutations and polymorphisms are responsible for the aberrant expression and defective activity of this heterodimeric complex. The current study aimed to determine the pattern of mutations among Iranian population with Glanzmann's thrombasthenia. A total of 20 patients with Glanzmann's thrombasthenia have been evaluated. All exons and splice sites of ITGA2B and ITGB3 genes were amplified using touchdown PCR. Mutation screening was analyzed using conformation sensitive gel electrophoresis heteroduplex PCR, and DNA sequencing. In addition to finding one previously identified mutation and polymorphism, the experimenters explored 3 and 2 novel mutations and polymorphisms, respectively. One substitution mutation, two deletions of a single nucleotide, one insertion of a single nucleotide, two synonymous polymorphisms, and one missense polymorphism were found using Sanger sequencing method. All detected mutations were homozygous which will most likely contribute to the pathogenesis of Glanzmann's thrombasthenia. Furthermore, it suggested ITGB3 as the mainly affected gene impaired in the patients with Glanzmann's thrombasthenia. As expected, the molecular results were consistent with the phenotypic findings so that GPIIb/IIIa complex was disrupted due to mutations in all type-I Glanzmann's thrombasthenia patients. It is concluded that intronic alterations or epigenetic regulations could be responsible for aberrant expression and/or defective activity of GPIIb/IIIa complex among other patients.