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The crystal structure of apatite, as seen along c . The unit cell is outlined. The M1-centred polyhedra are represented as six-fold coordinated metaprisms (the bonded O3 ligands are not included in this polyhedral representation). Two out of the seven bonds to M2 overlap in this projection, therefore only five are visible in the figure. 

The crystal structure of apatite, as seen along c . The unit cell is outlined. The M1-centred polyhedra are represented as six-fold coordinated metaprisms (the bonded O3 ligands are not included in this polyhedral representation). Two out of the seven bonds to M2 overlap in this projection, therefore only five are visible in the figure. 

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The apatite supergroup includes minerals with a generic chemical formula IXM12VIIM23(IVTO4)3X (Z = 2); chemically they can be phosphates, arsenates, vanadates, silicates, and sulphates. The maximum space group symmetry is P63/m, but several members of the supergroup have a lower symmetry due to cation ordering and deviations from the ideal topology...

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... potentially eligible as individual mineral species. The recently approved nomenclature scheme of Burke (2008) could logically be extended to the renaming of other apatite group minerals, changing, e.g. , pyromorphite into apa- tite-(PbCl), or alforsite into apatite-(BaCl). And one could be tempted to include also the various tetrahedral cations (P, As, or V), into the extended suffix [ e.g. , apatite-(PbAsCl) instead of mimetite, apatite-(CaAsOH) instead of johnbaumite]. The result would be mineral names that are more similar to chemical formulae. The limit of such an approach would be to adopt chemical formulae throughout, instead of mineral names. However, a nomenclature based extensively upon modified Levinson-style suffixes is likely to be rejected by the mineralogical community, since many would argue that multiple suffixes are difficult to be read, almost impossible to be spo- ken, not immediately self-explanatory, and unpleasant to the eye. Furthermore, such naming replaces many traditional names given to honour worthy individuals. A specific example of a nomenclature problem resulting from ordering in the apatite structure is presented by the recently approved Sr end-member of apatite lato sensu , Sr 5 (PO 4 ) 3 F (IMA 2008-009). While ‘‘strontioapatite’’ would have been an appropriate name for this species, a mineral with essentially the same name already exists, strontium-apatite [which has just been renamed apatite- (SrOH) after Burke (2008)]. Furthermore, the latter mineral has a cation-ordered structure, and it is actually F-dominant, with the ideal formula SrCaSr 3 (PO 4 ) 3 F (Efimov et al. , 1962; Klevtsova, 1964; Pushcharovsky et al. , 1987); therefore, its renaming as apatite-(SrOH) is incorrect. To make the issue even more complicated, there is also another cation-ordered member along the join Ca 5 (PO 4 ) 3 F , Sr 5 (PO 4 ) 3 F, namely fluorcaphite, SrCaCa 3 (PO 4 ) 3 F. For the above reasons the former chairman of the IMA CNMNC, E.A.J. Burke, asked us (MP & ARK) to convene a subcommittee to re-evaluate the nomenclature of minerals belonging to the ‘‘apatite group’’, to propose a new consistent nomenclature and to rationalize all existing mineral names in this group. The ‘‘apatite group’’ traditionally includes phosphate, arsenate and vanadate minerals. Other minerals belonging to different chemical classes, namely silicates ( e.g. , britholite), silicate-sulphates ( e.g. , ellestadite), and sulphates ( e.g. , cesanite) display the structural topology of apatite. In accordance with the newly approved standardisation of mineral group hierarchies (Mills et al ., 2009), all of these minerals can be included in the broader apatite supergroup. Because the same nomenclature questions are relevant for all members of the supergroup, they will all be considered in this report. All valid species within the apatite supergroup are listed in Table 1. Their ideal chemical formulae are also given, as they should appear in the official IMA List of Minerals. The minerals have here been divided into five groups on the basis of their crystallographic and/or chemical similarities. This report has been approved by the IMA Commission on New Minerals, Nomenclature and Classification. The archetype structure of apatite is hexagonal with space group P 6 3 / m and unit-cell parameters a 1⁄4 9.3 – 9.6, c 1⁄4 6.7 – 6.9 A ̊ . The generic crystal-chemical formula may be also written in its doubled form, which corresponds to the unit cell content, as follows: IX M1 M2 ( IV TO ) X ( Z 1⁄4 1), where the left superscripts indicate the ideal coordination numbers. In this report we will generally use the reduced formula with Z 1⁄4 2, which is commonly adopted in the mineralogical literature. Despite the rather simple formula, with only four key sites (M1, M2, T, and X) besides those (O1, O2, and O3) which are known to be occupied by O 2 À only, the number of distinct species based on cationic and anionic substitutions is quite large. This number increases further, because in some cases the M1 sites are split into pairs of non-equivalent sites with corresponding lowering of the space group symmetry. Concerning the coordination numbers, M1 has nine-fold (6 þ 3) coordination with the innermost six ligands forming a polyhedron that is often referred to as a metaprism (White & Dong, 2003; Dong & White, 2004a and b; Mercier et al. , 2005). When the three more distant ligands are included, the M1 coordination polyhedron is often described as a tri-capped trigonal prism. The M2 site is considered to be seven-fold coordinated whenever Ca is the central cation; such a polyhedron can be described as a distorted pentagonal bipyramid (Dolivo-Dobrovolsky, 2006); in other cases, e.g. , when the site is occupied by Pb and/or the X site is occupied by Cl, the coordination of M2 sites may be more irregular and the central cation may be considered to be eight- or nine-fold coordinated. A drawing of the apatite structure-type is shown in Fig. 2. The relationships among ionic sites and multiplicity and Wyckoff positions in all known space groups of apatite supergroup minerals are shown in Table 2. Species-forming M and T cations thus far known among minerals are: M 1⁄4 Ca 2 þ , Pb 2 þ , Ba 2 þ , Sr 2 þ , Mn 2 þ , Na þ , Ce , La , Y , Bi ; T P , As , V , Si , S , B 3 þ . Species-forming substitutions at the X anionic site are limited to the monovalent anions F À , Cl À , and (OH) À . This implies – for all minerals known thus far – a total of 50 negative charges per unit cell throughout [ i.e. , 24 O 2 À þ 2 (F, Cl, OH) À ]. In addition, many studies of synthetic compounds with the apatite structure have demonstrated that the X site can be occupied by O 2 À (which would increase the total negative charges) as well as vacancies and H 2 O molecules (which would decrease the total negative charges), that the M site can be occupied by Cd, Co, K, and almost all REE and that the T site can be occupied by Be, Cr, Ge, and Mn 5 þ . Even though in the present report we limit ourselves to natural compounds, the presence of M cations with charge 1 þ , 2 þ , and 3 þ , and of T cations with charge 4 þ , 5 þ , and 6 þ , implies a great number of possible combinations of different atoms, and thus of potentially different species. The valid, IMA-accepted mineral species within the apatite supergroup can be divided into five groups. Although we are aware that different groupings could be chosen, e.g. based upon purely chemical grounds, we prefer for our purposes a subdivision based on a combination of crystallographic and chemical criteria. Our five groups are as follows: (1) Apatite group : hexagonal and pseudo-hexagonal phosphates, arsenates, and vanadates containing the same prevailing (species-defining) cation at both the M1 and M2 sites. (2) Hedyphane group : hexagonal and pseudo-hexagonal phosphates, arsenates and sulphates containing different prevailing (species-defining) cations at the M1 and M2 sites. (3) Belovite group : hexagonal and trigonal phosphates with the M1 site split into the M1 and M1 0 sites containing different prevailing (species-defining) cations. (4) Britholite group : hexagonal and pseudo-hexagonal silicates, typically with partially ordered M1 and M2 cations. (5) Ellestadite group : hexagonal and pseudo-hexagonal sulphato-silicates with the ideal ratio (SiO ) 4 À : (SO ) 2 À 1⁄4 1: 1. These three minerals have ideal formulas Ca 5 (PO 4 ) 3 F, Ca 5 (PO 4 ) 3 OH, and Ca 5 (PO 4 ) 3 Cl, respectively. They were formerly known as fluorapatite, hydroxylapatite, and chlorapatite and were recently renamed as apatite-(CaF), apatite-(CaOH), apatite-(CaCl) (Burke, 2008). The birth of the three distinct names to denote the F-, OH-, and Cl- dominant variants, and their distinction with respect to the original ‘‘apatite’’ sensu lato is uncertain, but is generally ascribed to Damour (1856) for ‘‘hydroxylapatite’’ and Rammelsberg (1860) for ‘‘fluorapatite’’ and ‘‘chlorapa- tite’’. The crystal structure of ‘‘apatite’’ was first solved by Mehmel (1930) and N ́ray-Szab ́ (1930) in the space group P 6 3 / m , and typically all apatites crystallize in that space group. However, crystal structure refinement in lower symmetry space groups have been carried out on synthetic Ca 5 (PO 4 ) 3 Cl (Mackie et al. , 1972), Ca 5 (PO 4 ) 3 OH (Elliott et al. , 1973) and natural apatite-(CaCl) (Hughes et al. , 1990). This latter mineral, a monoclinic chlorapatite from Jackson Peak, Gunkock, Washington Co., Utah, USA is structurally identical (space group P 2 1 / b , with a doubled b -axis, and g % 120 ;) to apatite-(CaOH)- M (see below), of which it represents the Cl-dominant analogue. The mineral was referred to as clinohydroxylapatite by Chakhmouradian & Medici (2006), and subsequently renamed apatite-(CaOH)- M (Burke, 2008). Its monoclinic symmetry (non standard space group P 2 1 / b , evidently chosen so as to maintain the typical axial setting of apatites) probably results from orientational ordering of (OH) À anions within [00 z ] anionic columns, with consequent doubling of the periodicity along [010]. The following unit-cell parameters are given: a 9.445(2), b 18.853(4) c 6.8783(6) A ̊ , g 120.00(2) . All chemical analyses point to the ideal formula Ca 5 (PO 4 ) 3 (OH). A coupled substitution of Ca 2 þ by Na þ and of (PO 4 ) 3 À by (SO 4 ) 2 À has been reported. The formula of the most Na- and S-rich apatite- (CaOH)- M is ca. (Ca Na )(PO ) (SO ) (OH). Svabite, Ca 5 (AsO 4 ) 3 F, was first described by Sj ̈gren (1892) from the Hartsigen mine, V ̈rmland, Sweden. It is the arsenate analogue of apatite-(CaF). In the mineralogical literature svabite is commonly reported as hexagonal, P 6 3 / m . However, a crystal structure refinement of natural svabite is lacking. The structure of the synthetic analogue of svabite has been recently refined in the triclinic space group P " 1 (Baikie et al. , 2007). The hydroxyl analogue of svabite was observed as early ...

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... Atom labels given according to actual classification of apatite supergroup of minerals. 45 Visualizations of the crystal structure were performed in the VESTA program. 46 A powder XRD spectrum was simulated using the algorithms of RIETAN-FP 47 incorporated in the VESTA program. ...
... The crystal structure of apatite-related compounds based upon heteropolyhedral framework that consists of M1 tricapped trigonal prism (9-coordinated) edge-shared with 7coordinated M2 site and TO 4 tetrahedra. 45 The general view of our britholite structure projected along its c axis is shown in Figure 5. The M1 (4f) site is nearly equally populated by Ca and Pr, and its refined occupancy is (Ca 0.54 Pr 0.46 ) 1.00 . ...
... Geological Implications. The britholites are a mineral group within the apatite supergroup 45 with the general formula Ca 2 Ln 3 (SiO 4 ) 3 OH (where Ln are the lanthanides La−Lu and Y). Currently, two species of britholite are recognized: britholite-(Ce), and britholite-(Y), 77,96,97 with britholite-(La) described, 98 but not formally approved by the IMA. ...
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... The results show that the PL and LD deposits have hydroxyl apatite, and some fluorapatite, but the SN prospect samples all have hydroxyl apatite 65 . The apatites from the PL deposit have lower SO 3 contents than those from the LD deposit or SN prospect (Fig. 7a,b). ...
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... Apatite is a common accessory mineral in all natural systems. Many elements, including S, F, Cl, Fe, Mn, Sr, and rare-earth elements (REEs), are able to enter its crystal lattice as impurities and speciation ele- GEOLOGY ments (Piccoli and Candela, 2002;Rakovan and Hughes, 2002;Pasero et al., 2010;Webster and Piccoli, 2015). Natural apatites are resistant to late hydrothermal alteration and metamorphic processes and can preserve information about the parental melt (Ayers andWatson, 1991, Bouzari et al., 2016). ...
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... An essential feature of this structural group is its ability to incorporate a range of vicariant elements on the Ca and P sites. The general formula of the group, consisting of more than 20 mineral species, can be expressed as IX M1 2 VII M2 3 ( IV TO 4 ) 3 X with M = Ca 2+ , Pb 2+ , Ba 2+ , Sr 2+ , Mn 2+ , Na + , Ce 3+ , La 3+ , Y 3+ , Bi 3+ ; T = P 5+ , As 5+ , V 5+ , Si 4+ , S 6+ , B 3+ ; X = F, (OH), Cl [18]. Notably, the apatite minerals of the pyromorphite-mimetite series, Pb 5 (PO 4 ) 3 Cl-Pb 5 (AsO 4 ) 3 Cl, are rare and crucial for their physical properties [19,20]. ...
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... Grading ranges from 80 wt.% SiO 2 to 30 wt.% SiO 2 . The data used are from [15][16][17][18]. ...
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Rare earth elements (REE) in calcium apatite have been widely described in the literature. Based on the investigations of minerals and their synthetic analogs, the mechanism of substitution of REE3+ for Ca2+ and their structural positions are well established. Although the presence of REE in natural pyromorphite has been reported, the structural response of substitution of REE3+ for Pb2+ is not established. A better understanding of REE-rich Pb-apatite may facilitate the potential use of this mineral in industrial processes. Two La-doped pyromorphite analogs (Pb5(PO4)3Cl) and two control pyromorphite analogs (with the absence of La) were synthesized from aqueous solutions at 25˚C. Na+ and K+ were used as charge compensating ions to facilitate the incorporation of trivalent REE cations (La3+ + Na+  2Pb2+ and La3+ + K+  2Pb2+). Microprobe analysis, scanning electron microscopy, and Raman spectroscopy were used to confirm the purity of obtained phases. High precision crystal structure refinements (R1 = 0.0140–0.0225) of all four compounds were performed from single-crystal X-ray diffraction data. The La content varied from 0.12(1) to 0.19(1) atoms per formula unit with the counter ions of K+ and Na+, respectively. Both substituting ions were accommodated at the Pb1 site only. By comparing the La-doped pyromorphite analogs with their control samples it was possible to detect small changes in bond distances and polyhedral volumes caused by the La substitution. Variations in individual and mean interatomic distances reflected the cumulative effect of both the amount of substitution and ionic radii of substituting ions (La3+, Na+ and K+).
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The electronic band structure and features of the charge density distribution in lead oxide phosphate Pb10(PO4)6O and the copper-doped compound Pb9Cu(PO4)6O have been studied by the density functional theory. Despite the differences in chemical compositions and crystal structures, the type of chemical bonding in the Pb10(PO4)6O and Pb9Cu(PO4)6O compounds was found to be similar to the type of chemical bonding that we previously revealed in high-temperature superconductors and in parent compounds for their production—monoclinic α-Bi2O3 and orthorhombic La2CuO4. Although the lack of experimental data on the electronic band structure and physical properties of the Pb10(PO4)6O and Pb10−xCux(PO4)6O compounds does not currently allow us to conclude that superconductivity could exist at room temperature and atmospheric pressure in the Pb10−xCux(PO4)6O compound, further studies of the properties of lead oxide phosphate and other minerals of the apatite supergroup might be useful for identifying new types of promising materials for the production of high-temperature superconductors.
... According to Pasero et al. (2010), unless the structural vacancies are possible at some sites, in principle, criterion (a) is preferable to criteria (b) and (c). The allocation of cations such as P 5+ , As 5+ ,V 5+ , Si 4+ and S 6+ can be assumed to be in the tetrahedral coordination and, thus assigned to the T site. ...
... However, an explanation of partitioning between these two sites is not so easy without an accurate evaluation of the electron density at each of them that also requires a necessary structural study. Nevertheless, Pasero et al., (2010) suggested that the allocation of M cations maybe arranged in order of their increasing ionic radius. For example, the M1 site is filled with smaller cations, particularly Ca, and the M2 site is allocated with Olds et al. (2021). ...
... Table 1. A list of the 47 IMA-approved species in the apatite supergroup (revised fromPasero et al. 2010) classified by the WinApclas program. ...
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A Microsoft® Visual Basic software, called WinApclas, has been developed to calculate and classify wet chemical and electron-microprobe apatite supergroup mineral analyses based on the New Minerals, Nomenclature and Classification (CNMMN) of the International Mineralogical Association (IMA-10) nomenclature scheme. The program evaluates the 47 approved species based on the dominant cations at the M and T sites and anions at the X site in the reduced general formula IXM12VIIM23(IVTO4)3X within the apatite, hedyphane, belovite, britholite and ellestadite groups. Mineral analyses of the apatite supergroup species are calculated with different estimation and normalization options including 13 total anions, 8 total (M+T=8), 3T (P+As+V+Si+S=3), 8 total (M=5 and T=3) and 5M cations, respectively. Using the calculated anion values of apatite supergroup mineral analyses, the program first allocates the T site cations with charges between +4 and +6 and then shares all remaining cations with smaller ones in the range of +1 to +3 to fill the M site. Considering the dominant M and T site anions, WinApclas determines the apatite supergroups and defines the species in each group according to the dominant valance and constituents on the basis of dominant X anion such as F-, Cl- and OH-. The program allows the users to enter total 79 input variables that 54 of them (wt%) are used for the calculation and classification of apatite supergroups minerals, two of them (wt%) belonging to the melt or whole-rock SiO2 and P2O5 compositions to be used in estimation of the apatite saturation temperature values (oC) and the rest 23 for apatite trace (ppm) and rare earth element (REE) contents to handle the compositional and discrimination plots for provenance and mineral exploration studies. By applying the semi-quantitative formulae for apatite mineral analyses, WinApclas also provides the user to estimate the F, Cl and relative S contents (ppm) of melts as well as the redox states of magmas. All the calculated values are stored in an output Microsoft® Excel file that can be used for further evaluations. WinApclas is distributed as a self-extracting setup file, including the necessary support files used by program, a help file, and representative sample data files.