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Some examples of soil thin section images and associated simulated images (each image size is 1.6 by 1.2 cm) (a) original images (i.e., soil thin sections); (b) associated simulated image; (c) semivariograms of pore space in original and simulated images. 

Some examples of soil thin section images and associated simulated images (each image size is 1.6 by 1.2 cm) (a) original images (i.e., soil thin sections); (b) associated simulated image; (c) semivariograms of pore space in original and simulated images. 

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The characterization of the soil habitat is of fundamental importance to an understanding of processes associated with sustainable management such as environmental flows, bioavailability, and soil ecology. We describe a method for quantifying and explicitly modeling the heterogeneity of soil using a stochastic approach. The overall aim is to develo...

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... we need to assign states to all the cells in the first row, and the first cell of the next row. The cells in the first row are obtained using a two-neighborhood Markov chain where the state of a cell is conditionally dependent on the state of the cell to its left. The parameters for this Markov chain are obtained as above, but using the smaller two-cell neighborhood. The state of the first cell of the next row is determined using the same two-neighborhood conditional probability. Using these boundary values, the chain runs from the left-hand corner of the image and progresses in raster fashion across the image to the right-hand side. First, the state of cell ( i,j ) in the neighborhood is evaluated, followed by the state of cell ( i,j ϩ 1). The neighborhood is then advanced two cells to the left and the process is repeated. This continues until the last cell on the right-hand side is reached and its state is evaluated. At this point, the cells in the first two rows have been evaluated. Next, the neighborhood remains at the right-hand side but moves one row down. The chain now reverses direction, and instead of deriving the states of the ( i,j ) and ( i,j ϩ 1) cells in terms of the state of the others, it is the states of cells ( i,j ) and ( i , j Ϫ 1) that are determined. However, before the chain can proceed leftwards, the state of the first cell on the right-hand side of the third row must be evaluated. This is done in the same way as when the neighborhood was at the left-hand side of the domain, using the two-neighborhood conditional probability. The chain can now advance leftwards until the left-hand side of the domain is reached. The neighborhood then moves down one row, and the chain reverses as before. Thus, the whole domain is scanned in a raster-like fashion on this basis, until the states of all the required cells are obtained. The scanning scheme algorithm converges rapidly. In the examples reported here, we observed the transition kernel (i.e., the matrix of conditional probabilities for all possible neighborhood configurations), calculated from the recon- structed image as the chain progressed. Almost all the probabilities had become stable after the chain had completed 200 rows, which is equivalent to a depth of 4.0 mm in the original soil section and takes about 10 s of computing time on a 1.7- GHz Pentium IV computer. In other words, the minimum size of a simulated representative soil image should be 0.6 by 0.4 cm 2 , and it takes only a few minutes to generate an image covering several squared. The method was validated using images obtained from soil thin sections and selected to represent a broad contrast in structural properties. Soil cores were collected from an arable field and thin sections were produced using the method described in Nunan et al. (2001). Soil pore maps were obtained by subtracting images obtained with cross-polarized light from images cap- tured using transmitted bright-field light. The resultant images were then segmented into solid and void. The images employed in this study were binary pore maps of dimension 760 by 570 pixels, representing an area of 1.6 by 1.2 cm. Images were selected to represent a range of characteristic soil structural properties, as shown below. To compare the simulated and real images we selected a range of quantitative metrics that characterize the heterogeneity and connectivity of the structures under investigation. The most obvious of these is the porosity and this is readily determined from both the real and simulated structures. The corre- sponding values are listed in Table 1 and range from 7 to 24% in the real structures. There was no significant difference between the porosities in the simulated and real structures ( P Ͼ 0.05, paired t test). The second metric adopted was the mass fractal dimension, which essentially characterizes the degree of aggregation of the solid matrix. The mass (solid) fractal dimension was determined by the box counting method (Hastings and Sugihara, 1993). The calculated values are listed in Table 1, and again there was no significant difference between the simulated and real structures ( P Ͼ 0.05, paired t test). The third and fourth metrics chosen characterize the pore space, where visually obvious differences between the samples were present. The third is the variance of the porosity as measured in a 0.4 by 1.6 mm sampling window placed at 50 random locations in each image. For a given porosity, this is a measure of the connectivity of the pore space (Mandelbrot, 1985). We used the Chi-Square goodness-of-fit test, and tested the null hypothesis that the variances in each pair of simulated and original images were different. This could be rejected at the 95% confidence level indicating that this aspect of the structure of the pore space was not significantly different in the real and simulated images. The fourth metric measured the spatial correlation of the pore space by determining the semivariogram. Figure 3 shows the variograms for the different soil samples used in this study, and there are clear differences in these between the different soil sections. The figure shows the comparison between the variograms for the real and simulated structures. There is no formal statistical way of compar- ing the properties of semivariograms, however the high degree of correspondence between the curves for the measured and simulated structures is good, adding further support for the modeling ...

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