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Separation of pimaricin-inducing fractions from the culture broth of S. natalensis ATCC 27448. (A) Fractionation of the lyophilized solvent extract dissolved in water through a Sephadex G10 column. The two active fractions A1 and A2 are shaded. Size markers: sucrose (solid line), glucose (dotted line) and NaCl (dashed line). The initial peak (fractions 14–15) corresponds to the dextran blue marker. Note that the active fraction A2 eluted between glucose ( M r 180) and NaCl ( M r 58 ? 5). The elution peak of NaCl was followed by precipitation with a silver nitrate solution. (B) HPLC analysis in a C 18 column 

Separation of pimaricin-inducing fractions from the culture broth of S. natalensis ATCC 27448. (A) Fractionation of the lyophilized solvent extract dissolved in water through a Sephadex G10 column. The two active fractions A1 and A2 are shaded. Size markers: sucrose (solid line), glucose (dotted line) and NaCl (dashed line). The initial peak (fractions 14–15) corresponds to the dextran blue marker. Note that the active fraction A2 eluted between glucose ( M r 180) and NaCl ( M r 58 ? 5). The elution peak of NaCl was followed by precipitation with a silver nitrate solution. (B) HPLC analysis in a C 18 column 

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Production of pimaricin by Streptomyces natalensis ATCC 27448 is elicited by the PI-factor, an autoinducer secreted by the producer strain during the rapid growth phase. Exogenous PI-factor restored pimaricin production in a mutant strain npi287 defective in PI-factor biosynthesis. During purification of the PI-factor, a second pimaricin-inducing f...

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... of genes encoding enzymes for the biosynthesis of a few polyene macrolides have been reported (Aparicio et al. , 1999, 2000, 2003; Brautaset et al. , 2000; Caffrey et al. , 2001). Pimaricin is a glycosylated polyene macrolide produced by Streptomyces natalensis . Due to its particularly low toxicity, pimaricin is important for antifungal therapy in animals and it is widely used in the food industry to prevent mould contamination of cheese and other non-sterile foods. The synthesis of pimaricin in S. natalensis requires a complex polyketide synthase (PKS) and additional modification enzymes (Aparicio et al. , 2000). The pim gene cluster (85 kb) encodes 13 PKS modules within five multifunctional enzymes, and 12 additional proteins that catalyse post- PKS modifications of the polyketide skeleton (tailoring enzymes), or are involved in export and regulation of gene expression (Mendes et al. , 2001, 2005; Anto ́ n et al. , 2004). Different types of autoregulatory effectors are known to occur in micro-organisms (Yamada & Nihira, 1999; Klose, A receptor protein for butyrolactones has been reported recently in S. natalensis (Lee et al. , 2005), but it is unknown whether this receptor is specific for classical butyrolactones or whether it may also interact with PI-factor. 2006). During A receptor These purification protein effectors of for the are butyrolactones PI-factor synthesized (Recio and has et secreted been al. , 2004), reported by the we producer identified recently in a strains S. second natalensis and fraction internalized (Lee et able al. , to 2005), by induce other but production it cells is unknown in the of population whether pimaricin this in receptor (Robson the PI-factor is et specific al. defective , for 1997). classical npi The 287 butyrolactones mutant. presence This of butyrolactones or fraction whether did it not may in contain also different interact a butyrolactone, species with PI-factor. of but, Streptomyces as reported and in their this article, role in triggering NMR studies secondary showed metabolite that it consisted biosynthesis of is a well mixture documented of glycerol (Horinouchi and lactic & acid. Beppu, It was, 1992). therefore, Other autoinducers important to study belong the to effect at of least these six compounds different structural and their groups analogues (Yamada on the biosynthesis & Nihira, 1999; of pimaricin. Recio et al. , 2004). The biosynthesis of pimaricin is induced by PI-factor, a novel autoinducer produced by the parental wild-type strain S. natalensis ATCC 27448. The structure of PI-factor was determined as 2,3-diamino-2,3-bis-(hydroxymethyl)-1,4- butanediol and is clearly different from that of butyrolactones. The S. natalensis npi 287 mutant is unable to synthesize PI-factor and this compound restores pimaricin production in the npi 287 mutant when added externally (Recio et al. , 2004). The positive response to exogenous PI- factor indicates that this mutant is still able to internalize the PI autoinducer. Very little is known about the secretion and internalization (uptake) of autoinducers. The AI-2 of Salmonella enterica is internalized by the Lsr ACDB complex, an ABC-type transporter, and requires a functional glpD (glycerol-3-phosphate dehydrogenase) gene (Taga et al. , 2001; Xavier & Bassler, 2005). During purification of the PI-factor (Recio et al. , 2004), we identified a second fraction able to induce production of pimaricin in the PI-factor defective npi 287 mutant. This fraction did not contain a butyrolactone, but, as reported in this article, NMR studies showed that it consisted of a mixture of glycerol and lactic acid. It was, therefore, important to study the effect of these compounds and their analogues on the biosynthesis of pimaricin. Unexpectedly, the mass spectra (molecular masses of 93 ? 2 and 89 ? 3) and NMR spectra of the purified active fraction (Table 1) revealed that this fraction consisted of a mixture of glycerol and lactic acid. Exogenously added pure glycerol and lactic acid coeluted with the active fraction in HPLC. During Unexpectedly, The pimaricin-inducing purification the mass of the activity spectra PI inducer of (molecular the using mixture an masses induction of these of 93 two test ? 2 based and chemicals 89 on ? 3) the was and restoration confirmed NMR spectra using of of pimaricin pure the purified compounds. production active Addition fraction to the inducer-defective (Table 1) of glycerol revealed together strain that with this npi lactic fraction 287, a acid second consisted to SPG active of solid fraction a mixture medium was of isolated glycerol cultures after and of fractionation lactic the non-producer acid. Exogenously of the lyophilized npi 287 added strain solvent pure triggered glycerol extract of and pimaricin the lactic culture acid production. broth coeluted (Recio Such with et al. the an , 2004) active effect through fraction was not a in Sephadex observed HPLC. G10 when column each compound (Fig. 1). The was compound(s) tested separately purified on from solid the second medium active cultures, fraction but (A2) glycerol had alone low molecular was sufficient mass, to lacked elicit amino pimaricin groups, production since it in was liquid not cultures derivatized (see with below). FMOC A (fluorenylmethyl chloroformate), and eluted in reverse- phase HPLC with a retention time of 1 ? 9 min (Fig. 1B). The pimaricin-inducing activity of the mixture of these two chemicals was confirmed using pure compounds. Addition of glycerol together with lactic acid to SPG solid medium cultures of the non-producer npi 287 strain triggered pimaricin production. Such an effect was not observed when each compound was tested separately on solid medium cultures, but glycerol alone was sufficient to elicit pimaricin production in liquid cultures (see below). A stimulation of the production of pimaricin in the wild-type S. natalensis by the mixture of both compounds was also observed in solid medium. Triacetylated glycerol, in contrast to pure glycerol, did not exert any inducing effect, although it was efficiently used as carbon source (when supplied instead of glucose). These results suggested that free alcohol groups are required to produce the inducing effect. Glycerol alone triggered pimaricin biosynthesis in liquid cultures of npi 287 in NBG medium at concentrations in the range 70–120 mM. At concentrations higher than 100 mM the stimulatory effect was smaller (Fig. 2). At these concentrations the glycerol had a stimulatory effect on biomass. The best supplementation for pimaricin induction was a mixture of 100 mM glycerol and 100 m M lactic acid. The levels of pimaricin produced by the npi 287 mutant when supplemented with glycerol (23 m g pimaricin per mg dry weight or 400 m g per ml) were of the same magnitude as those obtained with the specific inducer PI at 1 m M concentration. However, whereas PI-facto ` was effective in the 100 nM to 1 m M range, glycerol was only active at concentrations above 50 mM. Similar studies were performed with the wild-type strain in NBG medium supplemented with glycerol or with the glycerol/lactic acid mixture. Glycerol alone produced a significant stimulatory effect on pimaricin production (up to 125 m g per mg dry weight) similar to that exerted by the glycerol/lactic acid mixture. The stimulatory effect was higher when glycerol (with or without lactic acid) was added at inoculation time or at 14 h than when added at 24 h after inoculation. The effect of the addition at 24 h was small but still detectable (Fig. 3). The higher effect observed when glycerol is added early to the cultures, as compared to the lower stimulation when added at 24 h, is consistent with an indirect role of glycerol, rather than a nutrient (precursor) effect. Furthermore, when glucose in the NBG medium was replaced by glycerol as carbon source, the pimaricin yield was lower (about 45–50 %), indicating that the glycerol stimulation is not merely a nutrient effect. The The Similar Glycerol results lack studies alone of observed requirement were triggered performed in solid pimaricin of medium lactic with biosynthesis the acid were wild-type for compared the in strain glycerol liquid with in those stimulatory NBG cultures in medium of liquid npi effect 287 medium. supplemented in observed NBG As medium in shown liquid with in at glycerol cultures concentrations Fig. 2, glycerol suggests or with in alone that the the or the glycerol/lactic range in different 70–120 combination physiological mM. acid At mixture. with concentrations conditions lactic Glycerol acid in higher triggered submerged alone than produced pimaricin 100 cultures mM a production makes significant the stimulatory lactic stimulatory in acid the unnecessary. effect npi 287 effect was mutant. on smaller pimaricin Lactic (Fig. 2). acid production ( D At - or these (up L -) to when concentrations 125 m added g per mg alone the dry glycerol weight) did not had similar produce a stimulatory to that any exerted significant effect by the on glycerol/lactic stimulating biomass. The effect best acid supplementation on mixture. pimaricin The production. for stimulatory pimaricin Addition effect induction was of higher lactic was a mixture acid when up glycerol of to 100 5 mM (with mM had or glycerol without no significant and lactic 100 acid) m M effect lactic was on added acid. dry at The weight inoculation levels or pimaricin of time pimaricin or production; at 14 produced h than lactic when by acid the added npi at 287 at 50 24 mM mutant h after was inoculation. when inhibitory. supplemented The effect with of the glycerol addition (23 at m g 24 pimaricin h was small per but mg still dry weight detectable or 400 (Fig. 3). m g per ml) The were higher of the effect same observed magnitude when as glycerol those obtained is added with early the to the specific cultures, inducer as compared PI at to 1 m the M lower concentration. stimulation ...

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... During the fermentation of S. natalensis, adding 0.2% propanol directly or 2 g/L acetic acid and propionic acid mixture at a 7:1 ratio to the fermentation medium increased the yield of pimaricin by 17% or 2.5 fold, respectively [22]. The addition of glycerol, ethylene glycol and propylene glycol during the fermentation of S. natalensis also increased the yields of pimaricin and other polyene antibiotics, and the addition of 100 mmol/L glycerol increased the yields of nystatin, candidin and pimaricin by 0.9 fold, 2.7 fold and 2.5 fold, respectively [23]. By adding 10 mmol/L methyl oleate to the medium of S. clavuligerus CKD1119, the intracellular methylmalonyl-CoA concentration was 12.5-fold higher than that of the control strain, suggesting that methyl oleate may be the source of acyl-CoAs. ...
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During the life activities of microorganisms, a variety of secondary metabolites are produced, including antimicrobials and antitumor drugs, which are widely used in clinical practice. In addition to exploring new antibiotics, this makes it one of the research priorities of Actinomycetes to effectively increase the yield of antibiotics in production strains by various means. Most antibiotic-producing strains have a variety of functional regulatory factors that regulate their growth, development, and secondary metabolite biosynthesis processes. Through the study of precursor substances in antibiotic biosynthesis, researchers have revealed the precursor biosynthesis process and the mechanism by which precursor synthesis regulators affect the biosynthesis of secondary metabolites, which can be used to obtain engineered strains with high antibiotic production. This paper summarizes the supply of antibiotic biosynthesis precursors and the progress of research on the role of regulators in the process of precursors in biosynthesis. This lays the foundation for the establishment of effective breeding methods to improve antibiotic yields through the manipulation of precursor synthesis genes and related regulators.
... E.g., E. coli, Citrobacter freundii, and Klebsiella pneumoniae from the Enterobacteriales and also Clostridium pasteurianum and Clostridium butyricum from the Clostridiales were previously shown to use glycerol as carbon source (Clomburg and Gonzalez (2013)). In the aerobic reactor, R2 also contains microorganisms that are able to degrade, e.g., Streptomyces natalensis from Actinomycetales was previously shown to use glycerol as a carbon source (Recio et al. (2006)). In other research works from Kaiser et al. (1994) and Borodina et al. (2005), it is concluded that glycerol can be a good carbon source for the other Streptomyces species. ...
Preprint
In this paper, we developed and analyzed lab-scale reactors that model the industrial saline wastewater treatment plant (SWWTP) used in North Water SWWTP in Delfzijl, the Netherlands. This industrial wastewater treatment plant is different from a typical municipal wastewater treatment plant, where the wastewater has some recalcitrant chemicals that are hard to degrade and contains a high COD-to-nitrogen ratio and a high concentration of NaCl. The process also differs from other standard industrial wastewater plants, where the anaerobic process precedes the aerobic process. The proposed lab-scale reactors are shown to be stable and able to represent the studied industrial SWWTP where glycerol is present in abundance, and there is no similar lab-scale model that has investigated the effect of glycerol on the process. The removal of COD (glycerol) and nitrogen in the system and the changes in the microbial community in both reactors were followed over time. Based on the data, we were able to study the growth of the microbial population that is present in the sludge. The result of the experiment showed that glycerol and ammonia were completely removed, and some nitrate was left in the effluent. At the end of the experiment, we determined that the order Actinomycetales dominated the anaerobic reactor since it is known as the organisms that use glycerol as the carbon source and is quite tolerant with a high salt concentration in the influent. On the other hand, the order Flavobacteriales dominated the aerobic reactor as it is correlated with the ammonia concentration.
... Streptomyces strains were routinely grown in yeast extract-malt extract (YEME) medium [32] without sucrose. The sporulation of Streptomyces strains was achieved as described elsewhere [33]. Candida albicans CECT 1394, C. glabrata ...
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The rise in the number of immunocompromised patients has led to an increased incidence of fungal infections, with high rates of morbidity and mortality. Furthermore, misuse of antifungals has boosted the number of resistant strains to these agents; thus, there is urgent need for new drugs against these infections. Here, the in vitro antifungal activity of filipin III metabolic intermediates has been characterized against a battery of opportunistic pathogenic fungi—Candida albicans, Candida glabrata, Candida krusei, Cryptococcus neoformans, Trichosporon cutaneum, Trichosporon asahii, Aspergillus nidulans, Aspergillus niger, and Aspergillus fumigatus—using the Clinical and Laboratory Standards Institute broth microdilution method. Structural characterization of these compounds was undertaken by mass spectrometry (MS) and nuclear magnetic resonance (NMR) following HPLC purification. Complete NMR assignments were obtained for the first time for filipins I and II. In vitro haemolytic assays revealed that the haemolytic action of these compounds relies largely on the presence of a hydroxyl function at C26, since derivatives lacking such moiety show remarkably reduced activity. Two of these derivatives, 1′-hydroxyfilipin I and filipin I, show decreased toxicity towards cholesterol-containing membranes while retaining potent antifungal activity, and could constitute excellent leads for the development of efficient pharmaceuticals, particularly against Cryptococcosis.
... It was reported that N-acetylglucosamine could elicit the production of actinorhodin and undecylprodigiosin in S. coelicolor (Ochi and Hosaka 2013). PI factor (2,3diamino-2,3-bis(hydroxymethyl)-1,4-butanediol), glycerol, and 1,2-propanediol elicited the improvement of natamycin production in S. natalensis (Recio et al. 2006). The elicitation response depends on the regulation of some metabolism pathways, upregulation of antibiotic activator, and the expression of some silent genes. ...
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Natamycin is a polyene macrolide antibiotic and widely used as a natural food preservative. Fungal elicitor had positive effects on the natamycin biosynthesis in Streptomyces natalensis HW-2. However, the global gene expression in response to fungal elicitor is not still reported. In the study, RNA-Seq was used to check the change of transcriptome by fungal elicitor in S. natalensis HW-2. The results showed that there were 1265 differential expression genes (DEGs) at 40 h and 2196 DEGs at 80 h. Most of the genes involved in natamycin biosynthesis were upregulated. KEGG pathway analysis showed that fungal elicitor had strong effects on the transcriptional levels of genes related to branch-chained amino acid (BCAA) metabolism. There were 23 upregulated or downregulated DEGs involved in BCAA biosynthesis and degradation at 40 h and 80 h. To confirm whether the improvement of BCAA biosynthesis could produce more natamycin, metabolic engineering was used to homologously overexpress the gene ilvH which encoded the regulatory subunit of acetolactate synthase (ALS) in S. natalensis. The results showed that overexpression of ilvH in S. natalensis HW-2 increased natamycin production to 1.25 g/L in the flask, which was a 32% increase compared with that of the parent strain. Real-time quantitative PCR analysis showed that the transcriptional level of ilvH in mutant strain S. natalensis ZS101 was significantly increased. Acetyl-CoA content was also raised. The results suggested that the fungal elicitor enhanced natamycin biosynthesis by improving precursor supply via BCAA metabolism. This study will open a new avenue for enhancing natamycin production by metabolic engineering and adding fungal elicitor. Key Points • The fungal elicitor had strong effects on the transcriptional levels of genes related to branch-chained amino acid metabolism by RNA-Seq. • The homologous overexpression of gene ilvH increased natamycin production by 32% and acetyl-CoA content was raised in mutant strain S. natalensis ZS101.
... In this context, elicitation is considered to be an effective strategy to increase the production of bioactive metabolites through the introduction of microbial cells or extracts to the production medium. There are some reports on enhanced production of bioactive secondary metabolites in plant (Ramirez-Estrada et al. 2016;Shakya et al. 2019;Nourozi et al. 2019), in fungi (Somjaipeng et al. 2016;Subban et al. 2019;Toghueo et al. 2018), and in bacteria (Luti and Mavituna 2011;Recio et al. 2006;Wang et al. 2013;Wang et al. 2017) through the use of elicitors. In the work described by Recio et al. (2006), glycerol, propanediol, and ethylene glycerol were used to increase pimaricin production in the PI factor-defective strain Streptomyces natalensis npi287. ...
... There are some reports on enhanced production of bioactive secondary metabolites in plant (Ramirez-Estrada et al. 2016;Shakya et al. 2019;Nourozi et al. 2019), in fungi (Somjaipeng et al. 2016;Subban et al. 2019;Toghueo et al. 2018), and in bacteria (Luti and Mavituna 2011;Recio et al. 2006;Wang et al. 2013;Wang et al. 2017) through the use of elicitors. In the work described by Recio et al. (2006), glycerol, propanediol, and ethylene glycerol were used to increase pimaricin production in the PI factor-defective strain Streptomyces natalensis npi287. In the work described by Luti and Mavituna (2011), dead Bacillus subtilis and Staphylococcus aureus cells are used to increase undecylprodigiosin production in Streptomyces coelicolor and in the work of Wang et al. (2013), four fungal elicitors can increase the production of natamycin in Streptomyces natalensis HW-2. ...
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The polyene macrolide rimocidin, produced by Streptomyces rimosus M527, is highly effective against a broad range of fungal plant pathogens, but at low yields. Elicitation is an effective method of stimulating the yield of bioactive secondary metabolites. In this study, the biomass and filtrate of a culture broth of Escherichia coli JM109, Bacillus subtilis WB600, Saccharomyces cerevisiae, and Fusarium oxysporum f. sp. cucumerinum were employed as elicitors to promote rimocidin production in S. rimosus M527. Adding culture broth and biomass of S. cerevisiae (A3) and F. oxysporum f. sp. cucumerinum (B4) resulted in an increase of rimocidin production by 51.2% and 68.3% respectively compared with the production under normal conditions in 5-l fermentor. In addition, quantitative RT-PCR analysis revealed that the transcriptions of ten genes (rimA to rimK) located in the gene cluster involved in rimocidin biosynthesis in A3 or B4 elicitation experimental group were all higher than those of a control group. Using a β-glucuronidase (GUS) reporter system, GUS enzyme activity assay, and Western blot analysis, we discovered that elicitation of A3 or B4 increased protein synthesis in S. rimosus M527. These results demonstrate that the addition of elicitors is a useful approach to improve rimocidin production. Key Points • An effective strategy for enhancing rimocidin production in S. rimosus M527 is demonstrated. • Overproduction of rimocidin is a result of higher expressed structural genes followed by an increase in protein synthesis.
... Our study reveals that R. mucilaginosa ATCC 25296 produces the archetype siderophore enterobactin when growth conditions are suboptimal in a minimal growth medium supplemented with glycerol, a known inducer of secondary metabolites in Streptomyces (43). We observed different growth responses to purified enterobactin by various members of the oral microbiota: some commensal Streptococcus species increased in growth while others decreased (independently in the presence of ROS). ...
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The communication language of the human oral microbiota is vastly underexplored. However, a few studies have shown that specialized small molecules encoded by BGCs have critical roles such as in colonization resistance against pathogens and quorum sensing. Here, by using a genome mining approach in combination with compound screening of growth cultures, we identified that the commensal oral community member R. mucilaginosa harbors a catecholate-siderophore BGC, which is responsible for the biosynthesis of enterobactin. The iron-scavenging role of enterobactin is known to have positive effects on the host’s iron pool and negative effects on host immune function; however, its role in oral health remains unexplored. R. mucilaginosa was previously identified as an abundant community member in cystic fibrosis, where bacterial iron cycling plays a major role in virulence development. With respect to iron’s broad biological importance, iron-chelating enterobactin may explain R. mucilaginosa ’s colonization success in both health and disease.
... Cheng improved Vitamin B12 fermentation process by adding rotenone to regulate the metabolism of Pseudomonas denitrificans (Sanchez and Demain, 2002;Bajaj and Singhal, 2009;Cheng et al., 2014). According to the biosynthetic pathway, small molecule compounds of polyhydroxy play important role in the biosynthesis of macrolides among the actinomycetes (Recio et al., 2006). However, to the best of our knowledge, little study is available on Streptomyces albulus for enhancing TMA production by high-throughput screening method or selecting the best suitable metabolic precursor during the fermentation. ...
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The aim of this study was to develop a potential microbial preservative to prevent the growth of fungi in food. The isolate ZC-G-5 showed strong antifungal activity against food spoilage fungi and Streptomyces albulus was identified on the basis of morphologic, culture, and 16S rDNA sequence analyses. The active metabolite was elucidated as tetramycin A (TMA) through spectroscopic techniques, including HR-ESI-MS, 1D-NMR, and 2D-NMR. An antifungal activity assay revealed that the minimum inhibitory concentration (MIC) and minimum fungicidal concentration (MFC) of TMA were 1.50–2.50 and 3.00–5.00 μg/ml, respectively. In situ antifungal activity analyses demonstrated that 90.0 μg/ml of TMA could inhibit the growth of fungi for over 14 days. In order to enhance TMA production, the high-yield mutant strain YB101 was screened, based on the isolate ZC-G-5, using a high-throughput screening method. The best metabolic precursor was selected during fermentation, when the concentration of glycerol was 8% (v/v) in Gauze’s broth medium to cultivate the mutant strain YB101; the concentration of TMA could be increased to 960.0 μg/ml, compared with the original isolate ZC-G-5, where the concentration of the TMA was only 225.0 μg/ml. Our study may contribute to the application of S. albulus and its active metabolite as a potential bio-preservative in the food industry.
... The research reported that the natamycin biosynthsis could be elicited by 2,3-diamino-2,3-bis(hydroxymethyl)-1,4-butanediol (PI factor) in S. natalensis [28]. Other compounds, such as glycerol and ethylene glycol, also had induction effect on natamycin biosynthesis [29]. Previously, we reported that fungal elicitors from P. chrysogenum induced the increase of natamycin yield in S.natalensis HW-2. ...
... Cell wall constituents, signaling molecules and carbohydrates which were derived from cells could be as elicitors [N-acetylglucosamine could elicit the production of actinorhodin and undecylprodigiosin in Steptomyces coelicolor [41]. PI factor (2,3-diamino-2,3-bis(hydroxymethyl)-1,4-butanediol) produced by S.natalensis, glycerol and 1,2propanediol elicited the improvement of 15]natamycin production in S.natalensis [28,29]. The elicitation response depends on the regulation of some metabolism pathways, up-regulation of antibiotic activator and the expression of some silent genes. ...
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Background Natamycin is a polyene macrolide polyketide antibiotics and used in 150 countries as a natural food preservative. Streptomyces natalensis is an important producer. Elicitation had been approved to be an effective method to improve the biosynthesis of secondary metabolites. Fungal elicitor from Penicillium chrysogenum AS 3.5163 showed inductive effect on the biosynthesis of natamycin in S. natalensis HW-2 fermentation. However, regarding the global gene expression of natamycin in response to fungal elicitor is not still reported. Results RNA-Seq analysis showed that there were 1265 differential expression genes (DEGs) at 40 h and 2196 DEGs at 80 h. The fungal elicitor had stronger effects on the transcription level of S. natalensis HW-2 at 80 h than that at 40 h. Gene Ontology (GO) enrichment analysis of DEGs showed significant enrichment in biological processes. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that the fungal elicitor mainly affected the expression levels of some genes about cellular process, metabolism and genetic information, especially in pentose phosphate pathway (PPP), glycolytic pathway (EMP) and tricarboxylic acid cycle (TCA). KEGG pathway showed that fungal elicitor had a greater influence on the metabolism of branched-chain amino acids (BCAAs). Among them, 23 DEGs associated with BCAAs metabolism were up-regulated or down-regulated. The supplementation experiment with BCAAs confirmed that 0.2 g/L of L-Ile and 0.5 g/L of L-Val increased natamycin yield by 17.6% and 37.8%, respectively. Fungal elicitor also up-regulated the transcriptional levels of most of the enzymes associated with the biosynthesis of natamycin and two important transcription regulators ( pimR and pimM ). To confirm the accuracy of RNA-Seq, the results of qPCR showed that these gene expression levels were in agreement with the transcription changes by RNA-Seq. Conclusion In this study, the change of transcriptional levels in S. natalensis HW-2 under treated with the fungal elicitor was firstly reported. The major finding of our comparative transcriptome analysis is that the fungal elicitor improves the supply of precursor, and alters the expression of natamycin related genes and regulator of secondary metabolism. From our results, we conclude that regulatory alterations are important factors for the enhancement of natamycin.
... S. filipinensis DSM 40112 was routinely grown in YEME medium [48] without sucrose. Sporulation was achieved as described elsewhere [49]. Escherichia coli strain DH5α was used as a host for DNA manipulation. ...
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The biosynthesis of the antifungal filipin in Streptomyces filipinensis is very sensitive to phosphate regulation. Concentrations as low as 2.5 mM block filipin production. This effect is, at least in part, produced by repression of the transcription of most filipin biosynthetic genes. The role of the two-component PhoRP system in this process was investigated. The phoRP system of S. filipinensis was cloned and transcriptionally characterised. PhoP binds to two PHO boxes present in one of its two promoters. Filipin production was greatly increased in ΔphoP and ΔphoRP mutants, in agreement with a higher transcription of the fil genes, and the effect of phosphate repression on the antibiotic production of these strains was significantly reduced. No PhoP binding was observed by electrophoretic mobility gel shift assays (EMSAs) with the promoter regions of the fil gene cluster thus suggesting an indirect effect of mutations. Binding assays with cell-free extracts from the wild-type and mutant strains on fil genes promoters revealed retardation bands in the parental strain that were absent in the mutants, thus suggesting that binding of the putative transcriptional regulator or regulators controlled by PhoP was PhoP dependent. Noteworthy, PhoP or PhoRP deletion also produced a dramatic decrease in sporulation ability, thus indicating a clear relationship between the phosphate starvation response mediated by PhoP and the sporulation process in S. filipinensis. This effect was overcome upon gene complementation, but also by phosphate addition, thus suggesting that alternative pathways take control in the absence of PhoRP.
... Hitherto, a few different types of autoregulators were reported (Chart 2), e.g., the pi-factor from S. natalensis (9) [44] and L-N-methylphenylalanyl-dehydrobutyrine diketopiperazine (10) from S. globisporus [45]. These molecules have no structural similarity to GBL-type compounds and their mechanisms of action remain unclear [46,47]. ...
... Hitherto, a few different types of autoregulators were reported (Chart 2), e.g., the pi- factor from S. natalensis (9) [44] and L-N-methylphenylalanyl-dehydrobutyrine diketopiperazine (10) from S. globisporus [45]. These molecules have no structural similarity to GBL-type compounds and their mechanisms of action remain unclear [46,47]. Goadsporin (11) [48,49], an active 19-aa peptide found in the culture broth of Streptomyces sp. ...
Article
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Whole genome sequencing of actinomycetes has uncovered a new immense realm of microbial chemistry and biology. Most biosynthetic gene clusters present in genomes were found to remain “silent” under standard cultivation conditions. Some small molecules—chemical elicitors—can be used to induce the biosynthesis of antibiotics in actinobacteria and to expand the chemical diversity of secondary metabolites. Here, we outline a brief account of the basic principles of the search for regulators of this type and their application.