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Representation of the cardiomyocyte structure http://www.cardio-research.com/cardiomyocytes

Representation of the cardiomyocyte structure http://www.cardio-research.com/cardiomyocytes

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Article
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We present a novel microscopic tridomain model describing the electrical activity in cardiac tissue with dynamical gap junctions. The microscopic tridomain system consists of three PDEs modeling the tissue electrical conduction in the intra- and extra-cellular domains, supplemented by a nonlinear ODE system for the dynamics of the ion channels and...

Citations

... Because of the obvious need to enable analysis close to the myocytes, cell-based models have recently been developed [11][12][13][14][15][16] , applied [17][18][19][20] , and analyzed [21][22][23][24][25][26] . These models are accurate at the level of micrometers at the cost of significant increase in computational efforts needed to solve the equations. ...
Article
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Cell-based models of excitable tissues offer the advantage of cell-level precision, which cannot be achieved using traditional homogenized electrophysiological models. However, this enhanced accuracy comes at the cost of increased computational demands, necessitating the development of efficient cell-based models. The widely-accepted bidomain model serves as the standard in computational cardiac electrophysiology, and under certain anisotropy ratio conditions, it is well known that it can be reduced to the simpler monodomain model. Recently, the Kirchhoff Network Model (KNM) was developed as a cell-based counterpart to the bidomain model. In this paper, we aim to demonstrate that KNM can be simplified using the same steps employed to derive the monodomain model from the bidomain model. We present the cell-based Simplified Kirchhoff Network Model (SKNM), which produces results closely aligned with those of KNM while requiring significantly less computational resources.
... More sophisticated and complex discretisation approaches have also been presented. Finite volume methods 20 are centred on the flux between nodes, similar to our formulation; various recently presented bidomain 21 and tridomain 22 formulations present advantages over the commonly implemented approaches, including the ability to incorporate dynamic gap junctions. We argue that our approach represents a fundamentally different philosophy to these prior models, centred on simplicity and exploitation of the underlying inherent discreteness of the system, that is nevertheless able to robustly simulate electrical conduction in the heart in the context of highly heterogeneous conduction properties. ...
Article
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Remodelling of cardiac tissue structure, including intercellular electrical coupling, is a major determinant of the complex and heterogeneous excitation patterns associated with cardiac arrhythmias. Evaluation of the precise mechanisms by which local tissue structure determines global arrhythmic excitation patterns is a major challenge that may be critically important for the development of effective treatment strategies. Computational modelling is a key tool in the study of cardiac arrhythmias, yet the established approaches for organ-scale modelling are unsuitable to capture the impact of local conduction heterogeneities; a novel approach is required to provide this multi-scale mechanistic insight. We present a fundamentally simple yet powerful approach to simulate electrical excitation in highly heterogeneous whole-heart models that exploits the underlying discreteness of the myocardium. Preliminary simulations demonstrate that this approach can capture lower conduction velocities and reproduce wave breakdown and the development of re-entry in a range of conditions.
... This model considers these three domains in a coupled manner, allowing for discontinuous potentials across cell boundaries, general representations of cell geometries, as well as particular distributions of ion charges on the cell membranes. Other tridomain cardiac models have been proposed in [4,5], both at the microscopic and macroscopic level. ...
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A Balancing Domain Decomposition by Constraints (BDDC) preconditioner is constructed and analyzed for the solution of hybrid Discontinuous Galerkin discretizations of reaction-diffusion systems of ordinary and partial differential equations arising in cardiac cell-by-cell models. The latter are different from the classical Bidomain and Monodomain cardiac models based on homogenized descriptions of the cardiac tissue at the macroscopic level, and therefore they allow the representation of individual cardiac cells, cell aggregates, damaged tissues and nonuniform distributions of ion channels on the cell membrane. The resulting discrete cell-by-cell models have discontinuous global solutions across the cell boundaries, hence the proposed BDDC preconditioner is based on appropriate dual and primal spaces with additional constraints which transfer information between cells (subdomains) without influencing the overall discontinuity of the global solution. A scalable convergence rate bound is proved for the resulting BDDC cell-by-cell preconditioned operator, while numerical tests validate this bound and investigate its dependence on the discretization parameters.
... We study the homogenization of a novel microscopic tridomain system, allowing for a more detailed analysis of the properties of cardiac conduction than the classical bidomain and monodomain models. In [5], we detail this model in which gap junctions are considered as the connections between adjacent cells in cardiac muscle and could serve as alternative or supporting pathways for cell-to-cell electrical signal propagation. Departing from this microscopic cellular model, we apply the periodic unfolding method to derive the macroscopic tridomain model. ...
... The microscopic tridomain model was proposed three years ago [20,15] in the case of just two coupled cells. Recently, we have extended in [5] this microscopic tridomain model to larger collections of cells. Further, we have established the well-posedness of this problem and proved the existence and uniqueness of their solutions based on Faedo-Galerkin method. ...
... The electric properties of the tissue at cellular level are described by the intracellular u k i,ε for k = 1, 2 and extracellular u e,ε , potentials respectively with the associated conductivities M ε i and M ε e . In [5], we presented and studied in details the non-dimensional tridomain model with respect the scaling parameter ε, as well as the models chosen for the membrane and gap junctions dynamics. More precisely, we consider the following microscopic tridomain model: ...
Preprint
We study the homogenization of a novel microscopic tridomain system, allowing for a more detailed analysis of the properties of cardiac conduction than the classical bidomain and monodomain models. In (Acta Appl.Math. 179 (2022) 1--35), we detail this model in which gap junctions are considered as the connections between adjacent cells in cardiac muscle and could serve as alternative or supporting pathways for cell-to-cell electrical signal propagation. Departing from this microscopic cellular model, we apply the periodic unfolding method to derive the macroscopic tridomain model. Several difficulties prevent the application of unfolding homogenization results, including the degenerate temporal structure of the tridomain equations and a nonlinear dynamic boundary condition on the cellular membrane. To prove the convergence of the nonlinear terms, especially those defined on the microscopic interface, we use the boundary unfolding operator and a Kolmogorov--Riesz compactness's result.
... We study the homogenization of a novel microscopic tridomain system, allowing for a more detailed analysis of the properties of cardiac conduction than the classical bidomain and monodomain models. In [5], we detail this model in which gap junctions are considered as the connections between adjacent cells in cardiac muscle and could serve as alternative or supporting pathways for cell-to-cell electrical signal propagation. Departing from this microscopic cellular model, we apply the periodic unfolding method to derive the macroscopic tridomain model. ...
... The microscopic tridomain model was proposed three years ago [20,15] in the case of just two coupled cells. Recently, we have extended in [5] this microscopic tridomain model to larger collections of cells. Further, we have established the well-posedness of this problem and proved the existence and uniqueness of their solutions based on Faedo-Galerkin method. ...
... The electric properties of the tissue at cellular level are described by the intracellular u k i,ε for k = 1, 2 and extracellular u e,ε , potentials respectively with the associated conductivities M ε i and M ε e . In [5], we presented and studied in details the non-dimensional tridomain model with respect the scaling parameter ε, as well as the models chosen for the membrane and gap junctions dynamics. More precisely, we consider the following microscopic tridomain model: ...
Article
We study the homogenization of a novel microscopic tridomain system, allowing for a more detailed analysis of the properties of cardiac conduction than the classical bidomain and monodomain models. In (Acta Appl.Math. 179 (2022) 1–35), we detail this model in which gap junctions are considered as the connections between adjacent cells in cardiac muscle and could serve as alternative or supporting pathways for cell-to-cell electrical signal propagation. Departing from this microscopic cellular model, we apply the periodic unfolding method to derive the macroscopic tridomain model. Several difficulties prevent the application of unfolding homogenization results, including the degenerate temporal structure of the tridomain equations and a nonlinear dynamic boundary condition on the cellular membrane. To prove the convergence of the nonlinear terms, especially those defined on the microscopic interface, we use the boundary unfolding operator and a Kolmogorov–Riesz compactness’s result.
Article
Communication via action potentials among neurons has been extensively studied. However, effective communication without action potentials is ubiquitous in biological systems, yet it has received much less attention in comparison. Multi-cellular communication among smooth muscles is crucial for regulating blood flow, for example. Understanding the mechanism of this non-action potential communication is critical in many cases, like synchronization of cellular activity, under normal and pathological conditions. In this paper, we employ a multi-scale asymptotic method to derive a macroscopic homogenized bidomain model from the microscopic electro-neutral (EN) model. This is achieved by considering different diffusion coefficients and incorporating nonlinear interface conditions. Subsequently, the homogenized macroscopic model is used to investigate communication in multi-cellular tissues. Our computational simulations reveal that the membrane potential of syncytia, formed by interconnected cells via connexins, plays a crucial role in propagating oscillations from one region to another, providing an effective means for fast cellular communication. Statement of Significance: In this study, we investigated cellular communication and ion transport in vascular smooth muscle cells, shedding light on their mechanisms under normal and abnormal conditions. Our research highlights the potential of mathematical models in understanding complex biological systems. We developed effective macroscale electro-neutral bi-domain ion transport models and examined their behavior in response to different stimuli. Our findings revealed the crucial role of connexinmediated membrane potential changes and demonstrated the effectiveness of cellular communication through syncytium membranes. Despite some limitations, our study provides valuable insights into these processes and emphasizes the importance of mathematical modeling in unraveling the complexities of cellular communication and ion transport.