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Reduction in size of thymic populations and impaired DN3a-to-DN3b transition in L19A mice. (A) Quantification of the total number of thymocytes (Upper). Each dot shows the total number of thymocytes in an individual mouse. Quantification of the number (Middle) and percentage (Lower) of thymocytes in the major populations defined according to expression of CD4 and CD8. Results and statistical analysis shown are based on pooled data from 67 WT and 72 L19A mice from 10 independent experiments. (B) Representative plots of the DN (CD4 À CD8 À ) subpopulations defined by the expression of CD44 and CD25 (Upper) and quantification of the percentage (Middle) and cell number (Lower) of these populations in WT, L19A, and Cd3z À/À mice. The DN population was pregated on the lineage negative (Lin À ) population (CD4 À , CD8 À , CD19 À , B220 À , GR1 À , NK1.1 À , TCRγδ À , CD11b À , CD11c À , TER119 À ). IEL precursors, identified as Lin À CD24 lo CD5 hi TCRβ hi CD44 lo cells, were excluded from the quantifications. Graphs show the averages calculated on the basis of data obtained from three independent experiments with 12 WT, 12 L19A, and 5 Cd3z À/À mice. (C) Representative flow cytometry plots of Lin À DN populations (defined as above) in WT, L19A, and Cd3e À/À thymi according to CD44 and CD25 markers (Upper; CD25 +/lo CD44 À DN3 and CD25 À CD44 À DN4 gates indicated) and identification of DN3a and DN3b subpopulations within the DN3 gate according to forward scatter (FSC) and CD3ζ-GFP expression (Lower). (C, Right) Quantification based on pooled data from six independent experiments showing the percentage of the DN3a, DN3b, and DN4 populations. (D) Representative histograms (Left) and quantification (Right) of the intracellular TCRβ expression levels in the DN3a (CD44 À CD25 + ), DN3b (CD44 À CD25 lo ), and DN4 (CD44 À CD25 À ) subpopulations. Thymocytes from Rag1-deficient mice were used as a control for intracellular staining and used as background control in all three overlays. Dashed lines indicate signal intensity obtained in Rag1 À/À thymocytes. Quantification for one out of four experiments is shown. (E) Representative histograms (Left) and quantification (Right) of extracellular TCRβ expression. Data represent quantification for one out of four experiments. All quantifications are presented as the mean ± SEM. P values were calculated using unpaired two-tailed Student's t tests with 95% CI (*P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001). e.c., extracellular; i.c., intracellular.

Reduction in size of thymic populations and impaired DN3a-to-DN3b transition in L19A mice. (A) Quantification of the total number of thymocytes (Upper). Each dot shows the total number of thymocytes in an individual mouse. Quantification of the number (Middle) and percentage (Lower) of thymocytes in the major populations defined according to expression of CD4 and CD8. Results and statistical analysis shown are based on pooled data from 67 WT and 72 L19A mice from 10 independent experiments. (B) Representative plots of the DN (CD4 À CD8 À ) subpopulations defined by the expression of CD44 and CD25 (Upper) and quantification of the percentage (Middle) and cell number (Lower) of these populations in WT, L19A, and Cd3z À/À mice. The DN population was pregated on the lineage negative (Lin À ) population (CD4 À , CD8 À , CD19 À , B220 À , GR1 À , NK1.1 À , TCRγδ À , CD11b À , CD11c À , TER119 À ). IEL precursors, identified as Lin À CD24 lo CD5 hi TCRβ hi CD44 lo cells, were excluded from the quantifications. Graphs show the averages calculated on the basis of data obtained from three independent experiments with 12 WT, 12 L19A, and 5 Cd3z À/À mice. (C) Representative flow cytometry plots of Lin À DN populations (defined as above) in WT, L19A, and Cd3e À/À thymi according to CD44 and CD25 markers (Upper; CD25 +/lo CD44 À DN3 and CD25 À CD44 À DN4 gates indicated) and identification of DN3a and DN3b subpopulations within the DN3 gate according to forward scatter (FSC) and CD3ζ-GFP expression (Lower). (C, Right) Quantification based on pooled data from six independent experiments showing the percentage of the DN3a, DN3b, and DN4 populations. (D) Representative histograms (Left) and quantification (Right) of the intracellular TCRβ expression levels in the DN3a (CD44 À CD25 + ), DN3b (CD44 À CD25 lo ), and DN4 (CD44 À CD25 À ) subpopulations. Thymocytes from Rag1-deficient mice were used as a control for intracellular staining and used as background control in all three overlays. Dashed lines indicate signal intensity obtained in Rag1 À/À thymocytes. Quantification for one out of four experiments is shown. (E) Representative histograms (Left) and quantification (Right) of extracellular TCRβ expression. Data represent quantification for one out of four experiments. All quantifications are presented as the mean ± SEM. P values were calculated using unpaired two-tailed Student's t tests with 95% CI (*P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001). e.c., extracellular; i.c., intracellular.

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Significance The ability of the T cell receptor (TCR) to convey signals of different intensity is essential for the generation of a diverse, protecting, and self-tolerant T cell repertoire. We provide evidence that pre-TCR signaling during the first stage of T cell differentiation, thought to only check for in-frame rearrangement of TCRβ gene segme...

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... mice to a Cd3z À/À background (15) so that the GFP-CD3ζ chains were the only CD3ζ chains expressed in these mice. Immunoblot analysis of whole lysates from total thymus and purified double-negative (DN) thymocytes showed the presence of ∼100-kDa covalently associated homodimers reactive with both CD3ζ-and GFP-specific antibodies (SI Appendix, Fig. S1 A and B). Homogeneous expression of the transgenic CD3ζ-GFP fusion proteins was detected by flow cytometry in all thymic subsets tested (SI Appendix, Fig. S1C). Mice on this background will be referred to as WT and L19A mice. We pooled the data of the two independent lines analyzed of each genotype, as we did not observe phenotypic ...
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... total thymus and purified double-negative (DN) thymocytes showed the presence of ∼100-kDa covalently associated homodimers reactive with both CD3ζ-and GFP-specific antibodies (SI Appendix, Fig. S1 A and B). Homogeneous expression of the transgenic CD3ζ-GFP fusion proteins was detected by flow cytometry in all thymic subsets tested (SI Appendix, Fig. S1C). Mice on this background will be referred to as WT and L19A mice. We pooled the data of the two independent lines analyzed of each genotype, as we did not observe phenotypic differences between them (SI Appendix, Fig. ...
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... of the transgenic CD3ζ-GFP fusion proteins was detected by flow cytometry in all thymic subsets tested (SI Appendix, Fig. S1C). Mice on this background will be referred to as WT and L19A mice. We pooled the data of the two independent lines analyzed of each genotype, as we did not observe phenotypic differences between them (SI Appendix, Fig. ...
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... isolated from L19A mice contained two-to threefold fewer cells than thymi from WT mice ( Fig. 1 A, Upper). The double-positive (DP), 4SP, and 8SP populations were reduced in number whereas there was a relative increase in DN thymocytes, indicating a defect in thymocyte differentiation that was occurring at the DN stage in L19A mice ( Fig. 1 A, Middle and Lower). ...
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... isolated from L19A mice contained two-to threefold fewer cells than thymi from WT mice ( Fig. 1 A, Upper). The double-positive (DP), 4SP, and 8SP populations were reduced in number whereas there was a relative increase in DN thymocytes, indicating a defect in thymocyte differentiation that was occurring at the DN stage in L19A mice ( Fig. 1 A, Middle and Lower). Subdivision of the DN population into the DN1 to DN4 subsets using the CD25 and CD44 markers (16) revealed similar percentages and numbers of CD44 + CD25 À DN1 and CD44 + CD25 + DN2 cells in L19A and WT thymi but a relative accumulation of CD44 À CD25 + DN3 cells and a relative and absolute reduction of CD44 À ...
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... population into the DN1 to DN4 subsets using the CD25 and CD44 markers (16) revealed similar percentages and numbers of CD44 + CD25 À DN1 and CD44 + CD25 + DN2 cells in L19A and WT thymi but a relative accumulation of CD44 À CD25 + DN3 cells and a relative and absolute reduction of CD44 À CD25 À DN4 cells in L19A thymi as compared with WT thymi (Fig. 1B). Thus, the earliest observable defect in αβT cell differentiation in L19A mice occurred at the transition from the DN3 to DN4 stage. The absolute numbers of DN4 thymocytes and the percentages of DN3 and DN4 mutant thymocytes were significantly different from those of CD3ζ-deficient mice (Fig. 1B), which present an almost complete loss ...
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... DN4 cells in L19A thymi as compared with WT thymi (Fig. 1B). Thus, the earliest observable defect in αβT cell differentiation in L19A mice occurred at the transition from the DN3 to DN4 stage. The absolute numbers of DN4 thymocytes and the percentages of DN3 and DN4 mutant thymocytes were significantly different from those of CD3ζ-deficient mice (Fig. 1B), which present an almost complete loss of the DN4 population, indicating that the L19A CD3ζ chain could at least partially overcome defects imposed by Cd3z deficiency on pre-TCR ...
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... quantified the percentage of DN3a and DN3b thymocytes in the DN population of L19A and WT mice using as a reference DN3 thymocytes from Cd3e-deficient mice, which can rearrange their Tcrb locus but cannot express the pre-TCR and do not reach the DN3b stage (19). L19A thymi contained significantly more DN3a and fewer DN3b thymocytes than WT thymi (Fig. 1C). This lag in T cell development was not due to the inability of L19A thymocytes to rearrange their Tcrb locus, as intracellular staining for TCRβ in the DN3b and DN4 populations of WT and L19A thymi showed an equal intensity (Fig. 1D). Moreover, cell-surface expression of the pre-TCR on the DN3b-enriched CD44 À CD25 lo population and ...
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... reach the DN3b stage (19). L19A thymi contained significantly more DN3a and fewer DN3b thymocytes than WT thymi (Fig. 1C). This lag in T cell development was not due to the inability of L19A thymocytes to rearrange their Tcrb locus, as intracellular staining for TCRβ in the DN3b and DN4 populations of WT and L19A thymi showed an equal intensity (Fig. 1D). Moreover, cell-surface expression of the pre-TCR on the DN3b-enriched CD44 À CD25 lo population and CD44 À CD25 À DN4 cells, measured by extracellular staining with an antibody against the TCRβ chain, was indistinguishable between L19A and WT mice (Fig. 1E). Likewise, cellsurface expression of CD3ε and pTα and expression of the ...
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... for TCRβ in the DN3b and DN4 populations of WT and L19A thymi showed an equal intensity (Fig. 1D). Moreover, cell-surface expression of the pre-TCR on the DN3b-enriched CD44 À CD25 lo population and CD44 À CD25 À DN4 cells, measured by extracellular staining with an antibody against the TCRβ chain, was indistinguishable between L19A and WT mice (Fig. 1E). Likewise, cellsurface expression of CD3ε and pTα and expression of the transgenic CD3ζ-GFP chain were equal for WT and L19A DN3b and DN4 thymocytes (SI Appendix, Fig. S2 A-D). We found that cell-surface expression and stoichiometry of the cell surface-displayed complexes of the pre-TCR were not affected by the L19A mutation in cell ...
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... and did not fuse or split during a time period of at least 5 s were analyzed. The average number of particles detected at the cell surface of L19A DN thymocytes was significantly lower than observed for WT DN thymocytes (Fig. 3B), even though no difference in the total level of expression of pre-TCRs was observed for these populations ( Fig. 1E and SI Appendix, Fig. S2 A-D). L19A pre-TCR particles had an increased diffusion rate as compared with WT particles (Fig. 3C). There was no significant difference in distribution between confined, free, and directed diffusion of mobile particles (Fig. 3D) excluding a shift in diffusion mode as the mechanism underlying the overall ...
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... a recent report strongly suggests that nanoclustering of the TCR indeed occurs in these cells and is relevant for the outcome of positive and negative selection (44). Analysis of the 4SP-to-8SP ratio in WT and L19A thymi also provides support for this notion, with L19A thymi having a lower ratio than WT thymi (data underlying Fig. 1A; 1.41 ± 0.67 vs. 2.07 ± 1.13; P < 0.05, unpaired two-tailed Student's t test). Lineage choice is determined by TCR signaling strength at the CD8 + CD4 low stage of selection with a higher signaling capacity necessary for the CD4 lineage choice (49). It could be expected that TCRs with higher self-pMHC affinity would be allowed to ...
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... male founder mice for each transgenic construct (WT-F10, WT-F19, L19A-F13, and L19A-F23), initially identified via Southern blot using a GFPspecific probe, were selected and backcrossed once with C57BL/6J females to check for germ-line transmission and further backcrossed to a Cd3z tm1Lov knockout background (15). Relative copy numbers of the transgenes, as determined by qPCR analysis of genomic DNA, were three-to fivefold higher for the L19A lines as compared with the WT lines, which displayed similar copy numbers (SI Appendix, Fig. S1E). Mice backcrossed for two to five generations to the C57BL/6J background, homozygous for the Cd3z tm1Lov allele, and always carrying the transgene in hemizygosity were used for the experiments described in this manuscript. ...
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... Microscopy. Pooled thymocyte suspensions from two or three WT or L19A mice were obtained and Lin À thymocytes were negatively selected using Ly6c-, F4/80-, CD11b-, CD11c-, CD19-, B220-, NK1.1-, CD4-, and CD8-specific antibodies and subsequently sheep anti-rat Dynabeads (Invitrogen, 11035). A second round of selection using a FACSAria Fusion cell sorter was performed on Lin À thymocytes to obtain DN CD44 À thymocytes (DN3 + DN4 populations) that express GFP levels under 10 3 relative fluorescence units. ...

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