Phase-portrait of the bistable spatially uniform system described by Eq (1). The steady states are at the intersections of the nullclines (red and yellow curves), the light green/blue curves show the stable/ unstable manifolds of the unstable steady state, and the arrows show the direction and rate of change at different locations on the RhoA-NMIIA phase-plane. The parameters are: α = 1, κ 1 = κ 2 = 0.4, n = 4. For this choice of parameters the location of the unstable saddle point is closer to the low fixed point at origin. https://doi.org/10.1371/journal.pcbi.1005411.g002 

Phase-portrait of the bistable spatially uniform system described by Eq (1). The steady states are at the intersections of the nullclines (red and yellow curves), the light green/blue curves show the stable/ unstable manifolds of the unstable steady state, and the arrows show the direction and rate of change at different locations on the RhoA-NMIIA phase-plane. The parameters are: α = 1, κ 1 = κ 2 = 0.4, n = 4. For this choice of parameters the location of the unstable saddle point is closer to the low fixed point at origin. https://doi.org/10.1371/journal.pcbi.1005411.g002 

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Mechanical coherence of cell layers is essential for epithelia to function as tissue barriers and to control active tissue dynamics during morphogenesis. RhoA signaling at adherens junctions plays a key role in this process by coupling cadherin-based cell-cell adhesion together with actomyosin contractility. Here we propose and analyze a mathematic...

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... RhoA is a lipid-anchored molecule, which can potentially diffuse in the mem- brane away from its source of activation [12,13]. Furthermore, mathematical models have revealed that reaction-diffusion systems of membrane-bound proteins can generate dynamic zones that exhibit travelling wave fronts that are not static or confined. In particular, these occur when diffusion is combined with bistability in the underlying dynamical system of non- linear interactions [14,15], akin to what we identified for the NMIIA-RhoA feedback network of the ZA [6]. Despite this, we observed that the morphology of the RhoA zone at the ZA was stable (Fig 1, S1 Movie), both in its width and the definition of its borders, over time scales (10s min) that are much longer than that of its constituent molecules (RhoA T 1/2 ~ 0.5 sec) DP160104342), Cancer Council Queensland (1086857), and Human Frontiers Science Program (http://www.hfsp.org/ RGP0023/2014). ZN is supported by an Australian Research Council Future Fellowship (FT130100659). GAG is supported by an Australian Research Council Future Fellowship (FT160100366) Optical imaging was performed at the ACRF/IMB Cancer Biology Imaging Facility, established with the generous support of the Australian Cancer Research Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the ...
Context 2
... seeking to understand how meso-scale stability of an NMIIA-RhoA system is achieved at adherens junctions (Fig 1) we considered a minimal model of a RhoA-NMIIA positive feed- back loop that can exhibit bi-stability. This corresponds to the case in which RhoA and NMIIA mutually recruit each other to the cell cortex following a Hill type process of cortical adsorption, and dissociate from the cortex with the dissociation rates, k RhoA and k NMIIA, respec- tively ...
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... then sought to test the predictions of this model for the RhoA zone of the ZA. We imaged active, GTP-loaded RhoA (GTP-RhoA) using a location biosensor derived from the C-termi- nus of anillin (GFP-AHPH, Fig 7). This reporter binds specifically to GTP-RhoA, and thus its localization identifies the location of GTP-RhoA [6]. As previously described [6], GTP-RhoA localized in a prominent ring-like zone at the apical poles of confluent MCF7 mammary epi- thelial cells (Figs 1 and 7A). Kymographic analysis of live-cell movies further confirmed that both the spatial definition of the zone (its width and definition of boundaries) and its signal intensity were stable over the 2 hr duration of the movies (Fig 7A and 7D-7F, S1 Movie). Based on our computational analysis we now predicted that diffusion driven by bistable signal- ing between NMIIA and RhoA would tend to cause an outward-travelling front of GTP-RhoA, unless this was counteracted by local mechanical stress (advective flow) at the ZA. Travelling wave and cortical advection define stable zones of RhoA ...
Context 4
... tested this prediction qualitatively by monitoring the spatiotemporal response of the GTP-RhoA zone when NMII was inhibited. For technical reasons, we blocked contractility using the ROCK inhibitor, Y-27632, as this drug is compatible with live-cell imaging. More- over, due to the geometry of cell in the monolayer and the position of the Rho zone (Fig 1), measurements could be only done in the XY plane of the cortex parallel to the plane of the microscope stage, which corresponds to the apical surface of the epithelial monolayer. Whereas control cells (Fig 7A, 7D and 7E), retained GTP-RhoA as a tightly defined band at apical junctions, addition of Y-27632 caused cortical GTP-RhoA to diffuse progressively out- wards from the junction, leading to a broader zone within ~50 min of adding the drug (Fig 7B and 7D-7F, S2 Movie). This broadened zone then faded after 2 hrs treatment, likely due to inactivation of GTP-RhoA by the cortical recruitment of p190B RhoGAP [6]. Indeed, when this experiment was performed in p190B RhoGAP RNAi cells, we found that the GTP-RhoA zone persisted and displayed even more pronounced outward flux from the junction after treatment with Y-27632 (S3 ...

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... Another mechanism that regulates junctional RHOA dynamics is a complex but fascinating feedback mechanism in which junctional myosin 2 maintains a balance of Rho activation and inactivation via ROCK-dependent phosphorylation of the non-canonical Rho GTPase RND3, which, in turn, modulates the recruitment of p190B-RhoGAP to the junctions 80 (Fig. 4d). A model based on diffusion counteracted by myosin 2-powered advection explains how the tight localization of RHOA-GTP to the junction is maintained in the face of rapid turnover 230 . ...
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Chapter
The Rho family of GTPases are known to play pivotal roles in the regulation of fundamental cellular processes, ranging from cell migration and polarity to wound healing and regulation of actin cytoskeleton. Over the past decades, accumulating experimental work has increasingly mapped out the mechanistic details and interactions between members of the family and their regulators, establishing detailed interaction circuits within the Rho GTPase signaling network. These circuits have served as a vital foundation based on which a multitude of mathematical models have been developed to explain experimental data, gain deeper insights into the biological phenomenon they describe, as well as make new testable predictions and hypotheses. Due to the diverse nature and purpose of these models, they often vary greatly in size, scope, complexity, and formulation. Here, we provide a systematic, categorical, and comprehensive account of the recent modeling studies of Rho family GTPases, with an aim to offer a broad perspective of the field. The modeling limitations and possible future research directions are also discussed.