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Persistent DNA damage foci accumulate activated DDR mediators. (A)HCA2 cells were either untreated or irradiated (10 Gy). At the indicated intervals thereafter, protein lysates were prepared. 25g were analyzed by SDS-PAGE and probed for the indicated proteins by western analysis. Membranes were exposed for different intervals to obtain optimal signals. -Actin, HSP60 and ponceaux staining (protein) were used as loading controls. (B)Cells were either untreated ('Control'), cultured to replicative senescence (SnR) or irradiated with 10 Gy and followed for 5 or 24 hours. Cells were fixed and stained for p53-pS15 (panels 1 and 3, green), total p53 (panels 4 and 6, green) or 53BP1 (panels 2 and 5, and panels 3 and 6, red). Yellow indicates merged red and green signals. (C)Earlypassage (PD25) HCA2 cells were irradiated with 10 Gy. At the indicated intervals thereafter, the irradiated cells and replicatively senescent (SnR) cells were stained as in B. Cells were scored for three or more p53 or p53-pS15 foci. Shown are the means ± s.d. from three or more independent measurements. (D)Cells were either untreated ('Control') or irradiated with 10 Gy and followed for the indicated times before being fixed and stained for 53BP1 (red) and CHK2-pT68 (green) using a rabbit antibody (Cell Signaling #2661, lot #7). Yellow indicates merged red and green signals. 

Persistent DNA damage foci accumulate activated DDR mediators. (A)HCA2 cells were either untreated or irradiated (10 Gy). At the indicated intervals thereafter, protein lysates were prepared. 25g were analyzed by SDS-PAGE and probed for the indicated proteins by western analysis. Membranes were exposed for different intervals to obtain optimal signals. -Actin, HSP60 and ponceaux staining (protein) were used as loading controls. (B)Cells were either untreated ('Control'), cultured to replicative senescence (SnR) or irradiated with 10 Gy and followed for 5 or 24 hours. Cells were fixed and stained for p53-pS15 (panels 1 and 3, green), total p53 (panels 4 and 6, green) or 53BP1 (panels 2 and 5, and panels 3 and 6, red). Yellow indicates merged red and green signals. (C)Earlypassage (PD25) HCA2 cells were irradiated with 10 Gy. At the indicated intervals thereafter, the irradiated cells and replicatively senescent (SnR) cells were stained as in B. Cells were scored for three or more p53 or p53-pS15 foci. Shown are the means ± s.d. from three or more independent measurements. (D)Cells were either untreated ('Control') or irradiated with 10 Gy and followed for the indicated times before being fixed and stained for 53BP1 (red) and CHK2-pT68 (green) using a rabbit antibody (Cell Signaling #2661, lot #7). Yellow indicates merged red and green signals. 

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DNA damage can induce a tumor suppressive response termed cellular senescence. Damaged senescent cells permanently arrest growth, secrete inflammatory cytokines and other proteins and harbor persistent nuclear foci that contain DNA damage response (DDR) proteins. To understand how persistent damage foci differ from transient foci that mark repairab...

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... (promyelocytic leukemia protein) defines a dynamic, heterogeneous subnuclear domain (nuclear body, NB) that participates in cellular responses to stress, including genotoxic stress ( Bernardi and Pandolfi, 2007). PML NBs can be found at DNA damage foci (Carbone et al., 2002;Xu et al., 2003) and act as general sensors of genomic damage ( Varadaraj et al., 2007). Because PML also facilitates p53 activation and the senescence growth arrest (Ferbeyre et al., 2000; Pearson et al., 2000), we evaluated its relationship to damage foci during the transition to senescence after ...
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... previously showed that persistent damage foci correlate with the DDR signaling that is essential for maintaining the senescence- associated growth arrest and inflammatory cytokine secretion ( Rodier et al., 2009), consistent with our finding here that DNA- SCARS contain active CHK2 and p53 (Fig. 2). Histone H2AX is dispensable for the initial formation of DNA damage foci but is required for their stabilization ( Celeste et al., 2003). We therefore tested the idea that depletion of H2AX might disrupt DNA-SCARS and hence senescence-associated ...
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... IR (10 Gy) generated 53BP1 foci that initially showed no preferential localization to PML NBs (Fig. 3A). However, as DNA-SCARS formed, most of them associated with a PML NB. This association began ~24 hours after IR, was complete 48 hours later (Fig. 3A) and persisted for many days ( Fig. 3B; note, ~10% of control cells had damage foci, most of which were PML associated (70%), suggesting that they were DNA-SCARS or TIF in the senescent cells that are present in most normal human cell populations). Unlike 53BP1 and H2AX, which completely colocalize, PML NBs were often at the periphery of DNA-SCARS. This was true for IR-induced (Fig. 3A,B), bleomycin-induced and replicative senescence (supplementary material Fig. ...
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... many human cells, active p53 is required for both establishment and maintenance of the senescence growth arrest ( Gire and Wynford-Thomas, 1998;Rodier et al., 2009), suggesting that there is a reservoir of active p53 in senescent cells. p53 activation occurs through stabilization and posttranslational modifications, particularly Ser15 phosphorylation (p53-pS15) by DDR kinases such as ATM ( Appella and Anderson, 2001). After 10 Gy IR, HCA2 cells showed the expected rapid rise in p53 and p53-pS15 levels, followed by a decline, as detected by western analysis ( Fig. 2A). However, p53 and p53-pS15 typically declined to levels slightly above those of pre-senescent controls ( Fig. 2A). ...
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... many human cells, active p53 is required for both establishment and maintenance of the senescence growth arrest ( Gire and Wynford-Thomas, 1998;Rodier et al., 2009), suggesting that there is a reservoir of active p53 in senescent cells. p53 activation occurs through stabilization and posttranslational modifications, particularly Ser15 phosphorylation (p53-pS15) by DDR kinases such as ATM ( Appella and Anderson, 2001). After 10 Gy IR, HCA2 cells showed the expected rapid rise in p53 and p53-pS15 levels, followed by a decline, as detected by western analysis ( Fig. 2A). However, p53 and p53-pS15 typically declined to levels slightly above those of pre-senescent controls ( Fig. 2A). ...
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... on the type of cell and damage, p53 has been reported present in (Al Rashid et al., 2005) or absent ( Bakkenist and Kastan, 2003;Bekker-Jensen et al., 2006) from early DNA damage foci. We therefore asked whether p53 was present in early foci or DNA- SCARS in normal human fibroblasts. Both p53 and p53-pS15 appeared in situ at 53BP1 foci within 5 hours of 10 Gy IR; moreover, both remained associated with DNA-SCARS for at least 10 days after IR and in replicatively senescent (SnR) cells (Fig. 2B,C). The specificities of the p53 antibodies were confirmed by immunostaining bleomycin-damaged human cancer cells that were either wild-type or null for p53 (supplementary material Fig. ...
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... results demonstrate that at least a fraction of the low level of p53-pS15 detected in senescent cells by western analysis ( Fig. 2A) is contained in DNA-SCARS, suggesting that they serve as reservoirs for the p53 activity that maintains the growth ...
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... Minutes after 10 Gy IR, CHK2-pT68 staining intensity increased, but it did so throughout the nucleus and without discernible enrichment at foci (Fig. 2D). This nucleoplasmic staining generally declined within 24 hours, after which focal staining began to appear. Many hours later, CHK2-pT68 clearly localized to DNA-SCARS (Fig. 2D). The specificity of the phospho-CHK2 antibody was confirmed by immunostaining irradiated wild-type and CHK2-null cancer cells (supplementary material Fig. S1G) and using a different antibody against phospho- CHK2 (supplementary material Fig. S1H). We also detected CHK2- pT68 in the DNA-SCARS (TIF) of replicatively senescent cells (data not shown). These results reconcile earlier results (Herbig et al., 2004;Lukas et al., 2003) and suggest that, although activated CHK2 diffuses through the nucleus immediately after damage, a fraction accumulates at DNA-SCARS in senescent cells. They also suggest that TIF are selectively localized ...
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... Minutes after 10 Gy IR, CHK2-pT68 staining intensity increased, but it did so throughout the nucleus and without discernible enrichment at foci (Fig. 2D). This nucleoplasmic staining generally declined within 24 hours, after which focal staining began to appear. Many hours later, CHK2-pT68 clearly localized to DNA-SCARS (Fig. 2D). The specificity of the phospho-CHK2 antibody was confirmed by immunostaining irradiated wild-type and CHK2-null cancer cells (supplementary material Fig. S1G) and using a different antibody against phospho- CHK2 (supplementary material Fig. S1H). We also detected CHK2- pT68 in the DNA-SCARS (TIF) of replicatively senescent cells (data not shown). These results reconcile earlier results (Herbig et al., 2004;Lukas et al., 2003) and suggest that, although activated CHK2 diffuses through the nucleus immediately after damage, a fraction accumulates at DNA-SCARS in senescent cells. They also suggest that TIF are selectively localized ...

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