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Nkx2-1 binds to both EphB1 and EphB3 promoters in vivo and drives their expression. A , Schematic drawing of Nkx2-1 binding sites (gray and black boxes) in the EphB1 and EphB3 loci. B , ChIP assays of E13.5 subpallium using a polyclonal antibody against Nkx2-1 and a nonspecific rabbit anti-IgG (RbIgG). Input chromatin represents 1% of the total chromatin. Negative ( Ϫ , all reagents except DNA) controls were included in each run. C , Quantification of the intensity of each PCR band obtained from the ChIP assays and normalized against the input band. Graphs show average Ϯ SEM. D , Quantification of the relative luciferase activity generated by the wild-type EphB1_reg3 , EphB1_reg4 , or EphB3_reg1–2 promoter regions compared with the luciferase activity generated by the same promoter regions but with a deletion of the Nkx2-1 consensus binding sites. Graphs show average Ϯ SEM. E , Quantitative PCR analysis for EphB1 and EphB3 in cells obtained from MGEs electroporated with pCAGIG or pCAGIG ϩ Nkx2-1 . Graphs show average Ϯ SEM. 

Nkx2-1 binds to both EphB1 and EphB3 promoters in vivo and drives their expression. A , Schematic drawing of Nkx2-1 binding sites (gray and black boxes) in the EphB1 and EphB3 loci. B , ChIP assays of E13.5 subpallium using a polyclonal antibody against Nkx2-1 and a nonspecific rabbit anti-IgG (RbIgG). Input chromatin represents 1% of the total chromatin. Negative ( Ϫ , all reagents except DNA) controls were included in each run. C , Quantification of the intensity of each PCR band obtained from the ChIP assays and normalized against the input band. Graphs show average Ϯ SEM. D , Quantification of the relative luciferase activity generated by the wild-type EphB1_reg3 , EphB1_reg4 , or EphB3_reg1–2 promoter regions compared with the luciferase activity generated by the same promoter regions but with a deletion of the Nkx2-1 consensus binding sites. Graphs show average Ϯ SEM. E , Quantitative PCR analysis for EphB1 and EphB3 in cells obtained from MGEs electroporated with pCAGIG or pCAGIG ϩ Nkx2-1 . Graphs show average Ϯ SEM. 

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In the developing telencephalon, the medial ganglionic eminence (MGE) generates many cortical and virtually all striatal interneurons. While the molecular mechanisms controlling the migration of interneurons to the cortex have been extensively studied, very little is known about the nature of the signals that guide interneurons to the striatum. Her...

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... and ErbB4 / ;HER4 heart mutant (F ) embryos. G, Quantification of the number of Nkx2-1-expressing cells in the caudal striatum of E15.5 control and ErbB4 / HER4 heart mutant embryos. Graphs show average SEM. H, I, Expression of Nkx2-1 in the striatum of E15. although with very high affinity to EphB1_ region 3, EphB1_region 4, and EphB3_region 2 [ Fig. 6A-C; n 3; relative intensity of PCR band normalized against the input band: 0.77 0.06 (Nkx2-1) and 0.11 0.01 (Rb IgG) for EphB1_region 4, 0.78 0.08 (Nkx2-1) and 0.16 0.02 (Rb IgG) for EphB1_region 4, 0.87 0.17 (Nkx2-1) and 0.07 0.05 (Rb IgG) for EphB3_region 2, average SEM; *p 0.05, **p 0.01, and ***p 0.001, t test]. To further confirm ...
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... 0.16 0.02 (Rb IgG) for EphB1_region 4, 0.87 0.17 (Nkx2-1) and 0.07 0.05 (Rb IgG) for EphB3_region 2, average SEM; *p 0.05, **p 0.01, and ***p 0.001, t test]. To further confirm that Nkx2-1 can acti- vate the expression of EphB1 and EphB3 we then performed luciferase assays using the promoter regions that appeared more significant in ChIP assays (Fig. 6D). For each of these regions, we performed par- allel experiments in which we compared the effect of Nkx2-1 on luciferase activity using the wild-type Nkx2-1 consensus binding sites and equivalent construc- tions in which these regions were specifi- cally deleted. We found a significant decrease in the luciferase activity in the ...
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... we compared the effect of Nkx2-1 on luciferase activity using the wild-type Nkx2-1 consensus binding sites and equivalent construc- tions in which these regions were specifi- cally deleted. We found a significant decrease in the luciferase activity in the presence of Nkx2-1 when consensus bind- ing sites were deleted for both EphB1 and EphB3 [ Fig. 6D; n 5; relative luciferase activity: 0.95 0.11 (EphB1_region 3_wt), 1.04 0.13 (EphB1_region 3_del1), 0.92 0.05 (EphB1_region 4_wt), 0.46 0.03 (EphB1_region 4_del1), 0.98 0.04 (EphB3_region 1-2_wt), 0.59 0.09 (EphB3_region 1-2_del1), 0.98 0.04 (EphB3_region 1-2_wt), and 0.51 0.13 (EphB3_region 1-2_del2), average SEM; *p 0.05, **p 0.01, ...
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... observations, we isolated RNA from MGEs electroporated with pCAGIG or pCAGIGNkx2-1 and we performed quantitative PCR. In these experiments, we confirmed a significant increase in the expression of EphB1 in Nkx2-1 overexpressing cells [n 3; mRNA fold change: 1.05 0.04 (control), 2.21 0.35 (Nkx2-1), average SEM; *p 0.05, t test], but not for EphB3 (Fig. 6E). This later result might be a consequence of the timing of the experiment or the sensitivity of our assay for this particular receptor. However, our collective re- sults suggest that Nkx2-1 directly regulates the expression of EphB receptors in striatal interneurons, which reinforce the view that EphB/ephrinB interactions control their ...

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