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Neurospora growing on the trunk of a burned tree. Colonies of conidiating Neurospora are easily spotted by their orange color due to the accumulation of carotenoid pigments. The picture was taken in a garden in Seville (Spain) a few weeks after a summer fire in 2004 and is probably Neurospora crassa as all the samples taken from this site were later identified as belonging to this species. doi:10.1371/journal.pone.0033658.g001 

Neurospora growing on the trunk of a burned tree. Colonies of conidiating Neurospora are easily spotted by their orange color due to the accumulation of carotenoid pigments. The picture was taken in a garden in Seville (Spain) a few weeks after a summer fire in 2004 and is probably Neurospora crassa as all the samples taken from this site were later identified as belonging to this species. doi:10.1371/journal.pone.0033658.g001 

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The ascomycete fungus Neurospora is present in many parts of the world, in particular in tropical and subtropical areas, where it is found growing on recently burned vegetation. We have sampled the Neurospora population across Spain. The sampling sites were located in the region of Galicia (northwestern corner of the Iberian peninsula), the provinc...

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... ascomycete fungus Neurospora crassa is used as a model organism for research on different aspects of eukaryotic molecular biology including RNA inactivation and gene silencing, the mechanism of genetic recombination, regulation by the circadian clock, and the regulation by light of gene expression [1–4]. In addition, a collection of more than 4000 Neurospora wild-type strains from natural populations has provided information about the distribution of the different species of Neurospora in the world [5,6]. Genomic analysis of wild-type strains of Neurospora has allowed detailed characterization of the process of adaptation to local environmental conditions [7]. Most of the Neurospora species have been identified in tropical or subtropical areas where they can be easily spotted growing on the surface of recently burned vegetation. Extensive surveys have extended the geographical distribution of Neurospora to temperate areas of western North America and Europe, with colonies of N. discreta identified as far north as Alaska [8,9]. The distribution of Neurospora species in nature is varied. For example, N. discreta is the most frequent Neurospora species isolated in western North America [8] but in Europe N. discreta was rarely found while N. crassa , N. sitophila , and N. tetrasperma were frequently observed [9]. The colonies of Neurospora are very conspicuous due to the accumulation of the orange carotenoid neurosporaxanthin in conidia and vegetative mycelia [10]. The biosynthesis of neurosporaxanthin in vegetative mycelia is induced by light [11] through the activation of the biosynthetic genes [12,13]. Light serves as an environmental cue to adjust the circadian clock so that Neurospora can anticipate changes in environmental conditions [12,14–16]. Carotenoids, like neurosporaxanthin, are antioxidants due to their capacity to quench reactive oxygen species [17–19], and provide protection against UV damage in human skin [20] and fungi [21–23], but not against gamma-radiation in the fungus Phycomyces blakesleeanus [24]. Pigmented strains of the basidiomy- cetous yeast Sporobolomyces ruberrimus and Cystofilobasidium capitatum were more tolerant to UV damage and showed better survival after UV treatment than unpigmented strains [21]. The accumulation of carotenoids protected the yeast Rhodotorula mucilaginosa from UV damage [23]. In animals, a photoprotective role for carotenes in echinoids eggs has been suggested [25], and mice fed with beta-carotene or canthaxanthin were protected against skin tumors caused by UV radiation [26]. Carotenoids provide protection against excess irradiation in photosynthetic organisms. For example, accumulation of carotenoids (beta- carotene, zeaxanthin, or canthaxanthin) in strains of the cyanobacterium Synechococcus after transformation with carotenogenic genes led to protection of photosynthesis from UV damage [27,28]. The activation by light of carotenoid biosynthesis in Neurospora and other fungi [29] may optimize protection against UV radiation when the fungus is growing exposed to light in open environments. Tropical regions (low latitude) receive more solar radiation than northern locations (high latitude). For a given site the amount of solar radiation changes during the time of the year, the altitude and the atmospheric conditions, but during the summer low-latitude locations receive twice the amount of UV-B radiation (280–315 nm) than high-latitude locations [30,31]. It is possible that the capability to accumulate carotenoids may affect the distribution of Neurospora species in low-latitude areas due to a high exposure to UV radiation. The region of Galicia (northwestern corner of the Iberian peninsula) and the two major islands of the Canary Islands archipelago (Tenerife and Gran Canaria, west coast of Africa) suffered an unusual number of wildfires during the summers of 2006 and 2007 respectively. Since Neurospora is easily spotted on burned vegetation, these summer fires allowed the opportunity to sample the Neurospora populations in these separated areas. We have observed differences in the distribution of Neurospora species in each site. The four Neurospora species that we have identified ( N. discreta , N. crassa , N. tetrasperma , and N. sitophila ) showed differences in the accumulation of carotenoids after light exposure. In addition, we have found a correlation between the accumulation of carotenoids in Neurospora and the latitude of the sampling site. Our results suggest that the capability to accumulate carotenoids plays a role in the distribution of Neurospora species in nature. Colonies of Neurospora were readily observed growing on the surface of partially burned vegetation (Fig. 1), as already observed previously in other European collection sites [9]. We collected Neurospora wild-type strains from eight sites located in the region of Galicia and from one site in the province of C ́ceres (summer of 2006), and from six sites in the Canary Island archipelago (summer of 2007) that included samples from the two major islands (Tenerife and Gran Canaria). The sites were selected by their accessibility to locations where wild fires had occurred recently (4– 6 weeks). The sites that we selected may not be representatives of the entire region. The location of the collection sites had latitudes that ranged from 27.88 u N (Fataga and Mor ́n, Las Palmas) to 42.74 u N (Herb ́n, A Coru ̃ a). In 41 plants we took more than one sample in order to investigate the presence of genetic variations in the Neurospora strains that colonized a single plant. The samples were collected, purified from single colonies, and stored prior to further characterization. From the samples that we isolated in the field trips we purified and stored a total of 125 wild-type strains (Table S1). Our collection also includes 26 Neurospora crassa strains isolated from Seville in 2004 that have been reported previously [9]. We used a phylogenetic method to identify the species of each collected Neurospora strain. We amplified and sequenced three unlinked polymorphic loci (TMI, TML, and DMG) from each wild-type strain [32]. These loci have been used successfully to infer the evolution and diversity of species of the genus Neurospora [32–35]. The sequences from the three loci from each strain were combined and aligned with homologous sequences from a set of reference Neurospora strains [32,35]. The resulting DNA alignment was used to reconstruct a phylogenetic tree by the Maximum- Likelihood and Neighbor-Joining methods (Fig. 2). The Neurospora species for each isolate was deduced by the presence of a reference Neurospora species close to each unknown strain in the phylogenetic tree. A group of isolates formed a clade with different N. crassa reference strains and were assigned to N. crassa . The Spanish N. crassa formed a clade with a reference N. crassa strain from clade B as previous European N. crassa isolates [9]. Similarly, a group of isolates formed a clade with reference N. discreta strains and were assigned as N. discreta . Finally, one strain (GC4-5C) formed a clade with N. sitophila and was assigned as a N. sitophila (Fig. 2). Some strains could not be assigned using the phylogenetic method. Three isolates (C9C, OU12C, and C6A) formed a well- defined clade that separated before the major clade that included all the N. discreta reference strains (Fig. 2). These strains were classified as N. discreta but they may represent a new phylogenetic species. In addition, a group of strains formed a clade that included N. tetrasperma , and N. hispaniola (Fig. 2). As an alternative method to identify the Neurospora species corresponding to these strains we performed blast searches using DNA sequences for the TMI, TML, and DMG loci from each strain. Searches of the Neurospora DNA database with sequences from DMG and TML from strains C9C, OU12C, and C6A identified N. discreta DNAs as the most similar sequences, thus confirming these strains as N. discreta . Searches using TMI identified a variety of different Neurospora species and were not considered. Searches using the three loci from the group of putative N. tetrasperma strains were not conclusive as they identified a variety of different Neurospora species. We therefore amplified and sequenced a fourth locus (QMA) [32] from these strains. Blast searches using QMA sequences from these strains identified N. tetrasperma DNA in the Neurospora DNA database and supported the assignment of these strains as N. tetrasperma . In addition, these strains produced Neurospora sexual structures, perithecia, when grown in independent cultures. Matured perithecia contained asci with four ascospores, and the strains developed asexual conidia (not shown) and accumulated carotenoids (see below). These biological properties are specific for N. tetrasperma , a self fertile species that can reproduce in isolation due to the presence of nuclei with either mating type in the same hyphae (pseudohomothalism) [5]. The biological properties of these strains, and the similarities of their QMA locus with N. tetrasperma DNA supported our assignment of these strains as N. tetrasperma . Further characterization of the Neurospora wild-type strains by phylogenetic species recognition (PSR) [36] confirmed the Neurospora species assigned to each strain, with the exception of the N. tetrasperma strains. We have identified 64 N. discreta strains, 17 N. tetrasperma strains, 69 N. crassa strains, and one N. sitophila strain (Table 1, Table S1). These heterothallic and pseudohomothallic species appear as a terminal clade in the phylogeny of the genus Neurospora [37]. The distribution of Neurospora ...

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... Carotenoids are pigments whose primary function is to protect cells and tissues against oxidative processes (Stahl and Sies, 2003). These pigments have already been described in entomopathogenic fungi for their role in the environmental detoxification of oxidative molecules in insect tissues during fungal colonization (Luque et al., 2012;Zhang et al., 2016;Wang and St. Leger, 2007). The carotenoid 19'-H is derived from xanthine, a metabolite detected in our in vitro cultured consortium (Stuart et al., 2022). ...
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