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Mesenchymal chondrosarcoma. Typical biphasic appearance (a) with chondroid (lower) and small round cell areas (upper). Round cell component (b) is often rich in vasculature, including some hemangiopericytomatous vessels. (c) Reverse transcription polymerase chain reaction assay with confirmatory Sanger sequencing reveals in-frame fusion between HEY1 and NCOA2 genes diagnostic of mesenchymal chondrosarcoma

Mesenchymal chondrosarcoma. Typical biphasic appearance (a) with chondroid (lower) and small round cell areas (upper). Round cell component (b) is often rich in vasculature, including some hemangiopericytomatous vessels. (c) Reverse transcription polymerase chain reaction assay with confirmatory Sanger sequencing reveals in-frame fusion between HEY1 and NCOA2 genes diagnostic of mesenchymal chondrosarcoma

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Soft tissue tumors encompass a wide variety of mesenchymal neoplasms exhibiting diverse clinical, pathologic, and molecular features. Among these, osteoid and/or chondroid matrix deposition in some soft tissue tumors represents a noticeable characteristic. Unlike matrices present in bone tumors where they likely reveal the respective cells of origi...

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... FN1 translocations have been reported in a wide variety of neoplasms that share overlapping morphologic features, including cartilaginous matrix production, [2][3][4][5][6] such as synovial chondromatosis, 3 and soft tissue chondroma (particularly with grungy or lacy/chondroblastoma-like calcifications). 7 Phosphaturic mesenchymal tumors (PMTs) frequently demonstrate FN1::FGFR1 or FN1::FGF1 fusions and have variable histology, including chondroid matrix with grungy calcifications, though these commonly produce FGF23 and are associated with osteomalacia in the majority of cases. ...
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... Ossifying fibromyxoid tumor (OFMT) is a rare soft tissue neoplasm of an uncertain line of differentiation and intermediate risk of malignancy. Up to 85% of OFMT present recurrent rearrangements mostly involving PHD finger protein 1 (PHF1), a Polycomb group protein, but also translocations of other genes related to histone modification functions as well [176,177]. A transcriptome sequencing study assessed the presence of alternate gene fusions in a subset of cases lacking those translocations [126]. ...
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... There was a fusion between the exon 19 of FN1 and exon 7 of FGFR2 in their cases. However, fusions of FN1 to other receptor tyrosine kinases have also been detected in some other neoplasms of soft tissue tumours, including the FN1-FGFR1 fusion in some chondromas (Amary et al., 2019), FN1-EGF fusion in calcifying aponeurotic fibroma (Puls et al., 2016), FN1-FGFR1 and FN1-FGF1 fusions in phosphaturic mesenchymal tumour (Lee et al., 2016), FN1-AVCR2A fusion in synovial chondromatosis (Amary et al., 2019), FN1-ROS1 fusion in inflammatory myofibroblastic tumour (Kao et al., 2020), FN1-ALK fusion in gastrointestinal leiomyoma and inflammatory myofibroblastic tumour (Panagopoulus, et al., 2016), and FN1-FGFR1 fusion in ALK-negative inflammatory myofibroblastic tumour (Kao et al., 2020). ...
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Thesis
Les chordomes sont de rares tumeurs du squelette axial à croissance lente qui sont très agressives localement et ont un potentiel métastatique modéré. Ces tumeurs sont résistantes aux thérapies conventionnelles et restent à ce jour sans traitement spécifique. La prise en charge des patients consiste en une résection chirurgicale de la tumeur avec pour objectif d’obtenir des marges saines, accompagnée de radiothérapie à hautes doses. Malgré cette première ligne de traitement agressive, les récidives locales sont fréquentes et les options de traitement de seconde ligne sont limitées. Les mécanismes de radiorésistance restent à ce jour inconnus. L’étude des chordomes est rendue difficile par sa rareté qui est reflétée par le faible nombre d’analyses omiques réalisées, souvent sur de faibles cohortes, et par le manque de modèles d’étude. Ce projet de thèse avait donc pour objectifs : i) de compléter la signature transcriptomique des chordomes en le comparant aux autres sarcomes, ii) de développer et de caractériser des modèles cellulaires 3D dans le but iii) d’évaluer la faisabilité d’une approche radiosensibilisante dans ces tumeurs. Cette étude a montré que le chordome a un répertoire d’expression génique spécifique, qui repose sur une forte activité des voies de signalisation de l’hypoxie et de la glycolyse. Ces travaux ont également montré que les modèles cellulaires 3D de chordome établis sont représentatifs de la maladie en termes d’d’histologie, d’expression génique et de résistance à la radiothérapie. Enfin, cette étude a montré le bénéfice d’une approche radiosensibilisante dans le chordome par l’inhibition de l’activité aldéhyde déshydrogénase.
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Aims: USP6 rearrangement underpins self-limiting fibroblastic/myofibroblastic neoplasms, including nodular fasciitis (NF), myositis ossificans (MO), aneurysmal bone cyst (ABC) and related variants. We characterized UPS6 and fusion partners to delineate the clinicopathologic, genetic, and bone-forming features in such lesions of soft tissue (ST). Methods and results: Break-apart FISH validated USP6 rearrangement in 31/35 NFs (containing 3/3 fasciitis ossificans [FO]), 7/8 cellular variants of fibroma of tendon sheath (C-FTSs), 4/6 MOs, 3/3 ST-ABCs, and 2/2 fibro-osseous pseudotumor of digits (FOPD). By FISH and RT-PCR, MYH9-USP6 was the commonest fusion in 4 C-FTSs and 20 NFs, including 1 intravascular and 2 infantile (1 retroperitoneal) cases. MYH9-USP6 fusion confirmed the diagnosis of 2 NFs >5 cm with prominent ischemic necrosis. COL1A1-USP6 fusion was predominant in ossifying lesions, including all FOs, MOs, ST-ABCs, and FOPDs with identified partner genes, and also present in non-ossifying head and neck NFs (HN-NFs) and C-FTSs in 2 cases each. A cervical NF of a 14-month-old girl harbored the novel COL1A2-USP6 fusion. Ossifying lesions exhibited considerable genetic and morphologic overlaps. Sharing COL1A1-USP6 fusion, FO and FOPD exhibited similar central or haphazard bone matrix deposition. Besides zonation of outward bone maturation, 4 COL1A1-USP6-positive MOs had incipient to sieve-like pseudocysts reminiscent of ST-ABC. Conclusion: MYH9-USP6 fusion is present in some C-FTSs and most NFs, including rare variants, but unrelated to bone formation. All bone-forming USP6-rearranged lesions adopt COL1A1 as the 5' partner, indicating close genetic kinships. However, COL1A1/COL1A2 also contributes to the pathogenesis of minor subsets of non-ossifying USP6-rearranged HN-NFs and C-FTSs.