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| Mefloquine remodels proteome of KYSE150 cells. MS analysis of global protein changes in KYSE150 cells after MQ (10 µM) treatment for 24 h compared with DMSO treatment. (A) Heat map representation of differentially expressed proteins between DMSO and MQ (10 µM) groups. The color key shows the log2 transformed protein amount ratios; (B) WoLF PSORT software analysis of the sub-cellular localization of differentially changed proteins; (C) Gene ontology term enrichment classification of differentially changed proteins according to cellular component and molecular function, with the top 4 related components and functions shown; (D) KEGG pathway enrichment map of down-regulated pathways (blue bars). Data was shown as -Log10 (Fisher's exact test p-value); (E) Venn diagram indicating the overlap between the 5 downregulated signaling pathways. Four overlapping proteins were listed; (F) Averaged quantitative kinase data from the full proteome, ranked according to their Log2 FC between the DMSO and MQ-treated cells, and the locations of SDHC, SDHD, MTCO3, and NDUFV3 were shown; (G) Western blot for SDHC, SDHD, MTCO3, and NDUFV3 in KYSE150 cells after DMSO or MQ (10 µM) treatment.

| Mefloquine remodels proteome of KYSE150 cells. MS analysis of global protein changes in KYSE150 cells after MQ (10 µM) treatment for 24 h compared with DMSO treatment. (A) Heat map representation of differentially expressed proteins between DMSO and MQ (10 µM) groups. The color key shows the log2 transformed protein amount ratios; (B) WoLF PSORT software analysis of the sub-cellular localization of differentially changed proteins; (C) Gene ontology term enrichment classification of differentially changed proteins according to cellular component and molecular function, with the top 4 related components and functions shown; (D) KEGG pathway enrichment map of down-regulated pathways (blue bars). Data was shown as -Log10 (Fisher's exact test p-value); (E) Venn diagram indicating the overlap between the 5 downregulated signaling pathways. Four overlapping proteins were listed; (F) Averaged quantitative kinase data from the full proteome, ranked according to their Log2 FC between the DMSO and MQ-treated cells, and the locations of SDHC, SDHD, MTCO3, and NDUFV3 were shown; (G) Western blot for SDHC, SDHD, MTCO3, and NDUFV3 in KYSE150 cells after DMSO or MQ (10 µM) treatment.

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Esophageal squamous cell carcinoma (ESCC) has a worldwide impact on human health, due to its high incidence and mortality. Therefore, identifying compounds to increase patients' survival rate is urgently needed. Mefloquine (MQ) is an FDA-approved anti-malarial drug, which has been reported to inhibit cellular proliferation in several cancers. Howev...

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... treatment caused a series of proteins to be differentially expressed in KYSE150 cells (Figure 3A). WOLF PSORT software was used to classify the sub cellular localization of the differential expression proteins, showing that 26% of the differentially expressed proteins localized to the mitochondria ( Figure 3B). ...
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... treatment caused a series of proteins to be differentially expressed in KYSE150 cells (Figure 3A). WOLF PSORT software was used to classify the sub cellular localization of the differential expression proteins, showing that 26% of the differentially expressed proteins localized to the mitochondria ( Figure 3B). Although plasma membrane was more affected (28%) compared with mitochondria (26%). ...
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... plasma membrane was more affected (28%) compared with mitochondria (26%). Gene ontology analysis also showed that the mitochondria were more sensitive to MQ treatment, based on cellular component and molecular function classification ( Figure 3C). The cellular components identified as being affected by MQ treatment included the mitochondrial membrane, mitochondrial envelope, and mitochondrion, and affected molecular functions included succinate dehydrogenase activity and electron carrier activity. ...
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... cellular components identified as being affected by MQ treatment included the mitochondrial membrane, mitochondrial envelope, and mitochondrion, and affected molecular functions included succinate dehydrogenase activity and electron carrier activity. Meanwhile, a KEGG pathway enrichment map showed the top five signaling pathways (Figure 3D), which were downregulated after MQ treatment. Venn diagram analyses indicated that mitochondrial proteins succinate dehydrogenase complex subunit C (SDHC), succinate dehydrogenase complex subunit D (SDHD), mitochondrially encoded cytochrome c oxidase III (MTCO3), and NADH: ubiquinone oxidoreductase subunit V3 (NDUFV3) were all involved in these pathways ( Figure 3E). ...
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... a KEGG pathway enrichment map showed the top five signaling pathways (Figure 3D), which were downregulated after MQ treatment. Venn diagram analyses indicated that mitochondrial proteins succinate dehydrogenase complex subunit C (SDHC), succinate dehydrogenase complex subunit D (SDHD), mitochondrially encoded cytochrome c oxidase III (MTCO3), and NADH: ubiquinone oxidoreductase subunit V3 (NDUFV3) were all involved in these pathways ( Figure 3E). In addition, the extensive protein reprogramming highlights a visible decrease of SDHC, SDHD, MTCO3, and NDUFV3 in MQ-treated cells (Figure 3F). ...
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... diagram analyses indicated that mitochondrial proteins succinate dehydrogenase complex subunit C (SDHC), succinate dehydrogenase complex subunit D (SDHD), mitochondrially encoded cytochrome c oxidase III (MTCO3), and NADH: ubiquinone oxidoreductase subunit V3 (NDUFV3) were all involved in these pathways ( Figure 3E). In addition, the extensive protein reprogramming highlights a visible decrease of SDHC, SDHD, MTCO3, and NDUFV3 in MQ-treated cells (Figure 3F). A separate table contains a list of the top down differentially regulated genes affected by the treatment was also shown in Table S1. ...
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... separate table contains a list of the top down differentially regulated genes affected by the treatment was also shown in Table S1. Western blot also verified that protein levels of SDHC, SDHD, MTCO3, and NDUFV3 were decreased in KYSE150 cells after MQ treatment ( Figure 3G). Therefore, based on the results of sub cellular localization classification, Gene ontology analysis and KEGG pathway enrichment, mitochondria dysfunction may play a vital role in MQ-induced anti-tumor effect. ...
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... cases of ESCC PDXs were chosen for experiment, including case EG59, case EG60, case EG20, and case EG84. The protein levels of SDHC are high in case EG59 and EG60, while the protein levels are low in case EG20 and EG84 (Figure 6A), while not the same with SDHD, MTCO3 and NDUFV3 (Figure S3). Mice were treated with solvent (0.9% normal saline) or MQ (50 or 200 mg/kg) by oral gavage, once a day. ...

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... In keeping with an impact on ATP production, disruption to the MMP was MQ concentration dependent 6 h post-exposure, with significant changes detected after exposures of 3.3 and 10 µM for 24 and 48 h, respectively ( Figure 5). In support of the impact of MQ on mitochondria, recent studies have shown that 10 µM MQ reduces the cell number in KYSE150 cells (an oesophageal squamous cell carcinoma cell line), reduces the NAD + /NADH ratio, and also influences the mitochondrial proteome, including key proteins involved in the oxidative phosphorylation reactions that lead to ATP production [45]. ...
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... Cell sample preparation and proteomics analysis KYSE150 cells (1 × 10 6 ) were treated with 10 µM PZM for 24 h, then cells were gathered for protein extraction. Samples preparation and proteomics analysis were executed as described previously [50]. The mass spectrometry proteomics data had been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) ...
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