Maximum-likelihood (ML) phylogeny is based on a MAFFT-alignment of the RNA-directed RNA polymerase (RdRp) amino-acid sequences of phenuiviruses and phenuivirus-like sequences using E-INS algorithm. The ML phylogenetic tree was inferred using IQ-TREE [8]; the numbers on the nodes represent bootstrap values derived from the ultrafast bootstrap algorithm [6]. Trees were inferred under the LG+G+I substitution model. Tree branches are proportional to genetic distances between sequences and the scale bars at the top indicate substitutions per amino acid. For all taxa shown here, the complete genome or complete coding sequence is available at the GenBank nucleotide sequence database. Accession numbers are shown next to the respective virus taxon.

Contexts in source publication

Context 1

... collected in Estonia in June 2013. Phylogenetic analyses placed the virus in basal position to rice stripe virus rice hoja blanca virus (Figure 1). The genome organization of European wheat striate mosaic virus and the other viruses consisting of four RNA segments each is identical. ...

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... Crossing tenui-like virus 1 has been detected in Culex annulirostris mosquitoes collected in Australia in April 2018 [10]. Phylogenetic reconstruction places the virus as a sister taxon to Wǔhàn horsefly virus (Figure 1). The genome of Fitzroy Crossing tenui-like virus 1 contains four segments encoding an RdRp, glycoproteins, a nucleocapsid and an unknown non-structural protein similar to one encoded by Wǔhàn horsefly virus. ...

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... genome of a new virus, Grapevine associated cogu-like virus 1, has been sequenced by HTS from Plamopara viticola-infected grapevine leaves collected in Italy in July 2018 [3]. Like the genomes of classified coguviruses, the genome of this novel virus consists of three segments, RNA1, RNA2, and RNA3, which are predicted to encode the viral RdRp, putative movement proteins (MPs), and N. The novel virus clusters in basal phylogenetic position to citrus concave gum-associated virus (Figure 1). Thus, we propose the creation of a new species, Grapevine coguvirus, to accommodate this virus. ...

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... year earlier, in 2017, another previously unknown virus has been detected in Esca-diseased grapevine wood tissue and was named grapevine associated cogu-like virus 4. Like laulaviruses the genomes of all three newly discovered viruses contain three segments (RNA1, RNA2, and RNA2) predicted to encode RdRp, putative MPs, and N. All three viruses cluster with Laurel Lake virus ( Figure 1). We propose the creation of three new species, Grapevine laulavirus 2, Grapevine laulavirus 3, and Grapevine laulavirus 4, to accommodate these new viruses. ...

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... to rubodviruses, both viruses encompass tri-segmented genomes each encoding a unique protein: RdRp, nucleocapsid protein (NP), and putative MP. The viruses were named grapevine Garan dmak virus and grapevine Muscat rose virus and show closest sequence identity (60% and 50%, respectively) to members of the genus Rubodvirus ( Figure 1). Thus, we propose the creation of two new species, Grapevine rubodvirus 1 and Grapevine rubodvirus 2, to accommodate these viruses. ...

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... recently discovered Narangue virus has been sequenced by HTS from a mosquito of the species Mansonia titillans collected in Colombia in April 2016 (unpublished). The virus shares a phylogenetic clade with Mothra virus (Figure 1). Thus, we propose the creation of a new species, Narangue mobuvirus, to accommodate this virus. ...

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... in Guadaloupe in 2017 [9]. Both viruses share a phylogenetic clade with phasiviruses ( Figure 1) and resemble the typical tri-segmented genome organization. Thus, we propose the creation of the species Kimberley phasivirus to accommodate Parry's Creek phasivirus and the species Guadaloupe phasivirus to accommodate Guadeloupe mosquito phasivirus. ...

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... phylogenetic analyses, the recently discovered Dar es Salaam virus is placed in a solitary position to other phenuivirids (Figure 1) ...