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Maximum-clade-credibility chronogram of BEAST analysis of the Begoniaceae focusing on Neotropical Clade 1. Node heights indicate mean ages. Geological epochs are indicated by background colour: light grey, Miocene (23.0-5.3 Ma); mid-grey, Pliocene (5.3-2.6 Ma); dark grey, Holocene and Pleistocene (2.6-0 Ma). Asterisks indicate posterior clade probabilities < 0.85, crosses indicate ML bootstrap values < 75, double crosses indicate posterior clade probabilities < 0.85 and ML bootstrap values < 75. Circles indicate species placed in sections different to their previous placement. 

Maximum-clade-credibility chronogram of BEAST analysis of the Begoniaceae focusing on Neotropical Clade 1. Node heights indicate mean ages. Geological epochs are indicated by background colour: light grey, Miocene (23.0-5.3 Ma); mid-grey, Pliocene (5.3-2.6 Ma); dark grey, Holocene and Pleistocene (2.6-0 Ma). Asterisks indicate posterior clade probabilities < 0.85, crosses indicate ML bootstrap values < 75, double crosses indicate posterior clade probabilities < 0.85 and ML bootstrap values < 75. Circles indicate species placed in sections different to their previous placement. 

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The pantropical genus Begonia is the sixth-largest genus of flowering plants, including 1870 species. The sections of Begonia are used frequently as analogues to genera in other families but, despite their taxonomic utility, few of the current sections have been examined in the light of molecular phylogenetic analyses. We present herein the largest...

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... Begonia sect. Kollmannia sect. nov. (Fig. 7). -We resolve B. thelmae L.B. Sm. & Wassh. and B. jaguarensis L.Kollmann & al. as sister to the "Begonia acetosa ...
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... Begonia sect. Stellandrae sect. nov. (Fig. 7). -We resolve B. hoehneana as sister to the "Wageneria clade", although this position is poorly ...
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... Begonia sect. Donaldia (Fig. 7). -Begonia sect. Donaldia is resolved as sister to a clade containing B. sect. Stellandrae sect. nov., and the "Wageneria clade". Both this clade and its relation- ships to related sections are well supported, and we also resolve B. dichotoma Jacq. and B. scabrida A.DC. within the ...
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... The "core Pritzelia clade" (Fig. 7). -The majority of species in B. sect. Pritzelia are resolved in a clade containing B. dietrichiana Irmsch., the type of B. sect. Pritzelia. We further resolve B. sect. Scheidweilaria (Klotzsch) A.DC.; the mono- typic B. sect. Trendelenbergia (Klotzsch) A.DC.; and B. venosa (2) • April 2018: 267-323 Moonlight & al. • Phylogenetic sectional classification of Begonia (Begoniaceae) ...
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... The "Wageneria clade" (Fig. 7). -All sampled species of B. sect. Wageneria are resolved within a clade sister to B. sect. Stellandrae sect. nov. This clade is remarkable within Begonia for the lack of sequence divergence among its species, indicated in Fig. 7 by the short branch lengths and poor support for the majority of relationships within the clade. A number of species of B. sect. Pritzelia are also resolved within this clade, which is highly ...
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... The "Wageneria clade" (Fig. 7). -All sampled species of B. sect. Wageneria are resolved within a clade sister to B. sect. Stellandrae sect. nov. This clade is remarkable within Begonia for the lack of sequence divergence among its species, indicated in Fig. 7 by the short branch lengths and poor support for the majority of relationships within the clade. A number of species of B. sect. Pritzelia are also resolved within this clade, which is highly ...
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... also did not sample any members of the six species of the "calcarea group", as defined by , and they have not been included in previous phylogenetic analyses. We follow and do not assign these species to section. Neotropical Clade 1 (Fig. 7). -Neotropical Clade 1 (NC1) as defined by contains the majority of American species from east of Amazonia and a small number of widespread groups found throughout the Americas. The major clades and their branching order replicates those described by Moonlight & al., but we double the number of sampled species within this clade. NC1 can be split into three major clades: two clades of "cane-like" Brazilian Begonia; a clade we informally name the "core Pritzelia clade"; and B. sect. Wageneria (Klotzsch) A.DC. and B. sect. Donaldia (Klotzsch) A.DC. nested within a grade of small groups of phylogenetically and morphologically distinct species we describe as B. sect. Kollmannia sect. nov. and B. sect. Stellandrae sect. ...
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... Begonia sect. Latistigma (Fig. 7). -All sampled Brazilian species of B. sect. Knesebeckia, as circumscribed by Doorenbos & al. (1998), are only distantly related to the type of the section (B. incarnata Link & Otto). We resolve a group of species includ- ing B. aconitifolia A.DC., the type of B. sect. Latistigma A.DC., which we reinstate, as sister to B. sect. ...
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... Begonia sect. Gaerdtia (Fig. 7). -The majority of spe- cies in B. sect. Gaerdtia (Klotzsch) A.DC. including the type are resolved in a monophyletic group including B. coccinea Hook., which was previously classified in B. sect. Pritzelia (Klotzsch) ...
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... The "Begonia acetosa clade" (Fig. 7). -We resolve as sister to B. sect. Kollmannia sect. nov. a well-supported clade containing two rhizomatous species currently classified in B. sect. Pritzelia: B. acetosa Vell. and B. subacida Irmsch. This relationship is well ...
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... Begonia sect. Tetrachia (Fig. 7). -We resolve B. sect. Tetrachia Brade as sister to the remainder of NC1, although this placement is poorly supported. Relationships within B. sect. Tetrachia are also poorly ...
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... Begonia (Fig. 8). -All sampled species of B. sect. Gireoudia (Klotzsch) A.DC. and B. sect. Weilbachia (Klotzsch & Oersted ex Klotzsch) A.DC. are resolved in a well-supported clade. We resolve B. sect. Weilbachia as polyphyletic within a paraphyletic B. sect. Gireoudia and newly synonymise B. sect. Weilbachia with B. sect. Gireoudia. NC2-ii (Fig. 9). -The branching order among the early-di- verging clades of NC2-ii is well-resolved and all major clades are well supported. We resolve a clade containing five well-sup- ported, early-diverging clades from eastern South America of which three correspond to currently recognised sections: B. sect. Solananthera A.DC; B. sect. ...
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... Begonia sect. Astrothrix sect. nov. (Fig. 9). -We resolve a clade containing two species (B. santos-limae Brade, B. bul- latifolia L.Kollmann) of B. sect. Knesebeckia. Together with four unsampled species, these species have been recognised as forming a morphologically and geographically distinct group within B. sect. Knesebeckia (Kollmann, 2009;Kollmann & Peixoto, ...
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... Begonia sect. Pereira (Fig. 9). -A fourth eastern South American clade contains B. edmundoi Brade, B. lubbersii E.Morren, and B. pseudolubbersii Brade, all recognised by Doorenbos & al. (1998) in B. sect. Gaerdtia. We reinstate B. sect. Pereira, typified by B. edmundoi, to include these ...
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... Begonia sect. Pilderia and sect. Rossmannia (Fig. 9). -We resolve a clade containing B. sect. Pilderia (Klotzsch) A.DC. as recircumscribed by Moonlight and Jara (Moonlight & Jara-Muñoz, 2017) as sister to the monotypic B. sect. Ross- mannia A.DC. These sections are together resolved as sister to the remainder of ...
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... Begonia sect. Ephemera sect. nov. (Fig. 9). -A well-sup- ported clade containing the majority of sampled South American members of B. sect. Begonia is resolved as sister to the remain- der of NC2-ii. Begonia hirtella Link, treated by Doorenbos & al. (1998) in B. sect. Doratometra, is included in this ...
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... Begonia sect. Ruizopavonia (Fig. 9). -The relationships between the next three early-diverging, well-supported clades within NC2-ii remain unresolved. The first of these contains primarily species treated by Doorenbos & al. within B. sect. Ruizopavonia; however, this section is polyphyletic. Species resolved within this clade share raised veins on the underside of the ...
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... Horn-fruited Andean Begonia (Fig. 9). -Begonia sect. Casparya and B. sect. Semibegoniella together form a dis- tinctive group of Andean species with horn-like fruits that dehisce along the back of the locules. The two sections were distinguished by Doorenbos & al. (1998) by the connate tepals of B. sect. Semibegoniella, its less numerous stamens, and its simple placentae ...
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... numerous stamens, and its simple placentae (usually bifid in B. sect. Casparya). While we note that our results suggest the two sections may not be reciprocally monophyletic, we refrain from making formal changes to their circumscriptions while we await more detailed morphological and molecular data (A. Jara, unpub. data). • Begonia sect. Lepsia (Fig. 9). -The remainder of Begonia sect. Ruizopavonia is resolved in a clade including B. holtonis A.DC., the type of B. sect. Meionanthera A.DC., and B. foliosa Kunth, the type of B. sect. Lepsia (Klotzsch) ...
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... Begonia sect. Doratometra (Fig. 9). -Three species of Begonia sect. Doratometra are resolved as sister to the re- mainder of NC2-ii. We do not sample B. wallichiana Lehm., the type of the section, but reproduce the circumscription of the section of Doorenbos & al. (1998) with the exception of B. hirtella Link, which was treated by Doorenbos & al. in B. sect. Doratometra ...
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... Caribbean Begonia sect. Begonia (Fig. 9). -All sam- pled Caribbean species of B. sect. Begonia are resolved as a grade with the remainder of NC2-ii nested within. The first dichotomy within this grade separates all sampled species of Caribbean B. sect. Begonia (except B. acutifolia Jacq.) from the remainder of NC2-ii (including B. acutifolia). The second dichotomy resolves B. ...
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... Bolivian Begonia (Fig. 9). -The Bolivian species of Begonia are among the most poorly known of the genus, with most known species described with incomplete descriptions, few having been covered in floristic accounts, and several other species awaiting description (P.W. Moonlight, unpub. data; M.C. Tebbitt, unpub. data). The members of B. sect. Hydristyles ...
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... Begonia sect. Cyathocnemnis (Fig. 9). -The final clade of NC2-ii contains primarily species of B. sect. Cyatho cnemis. We also resolve B. obtecticaulis Irmsch. within this clade. NC2-iii (Fig. 10). -We increase the sampling within NC2-iii from seven species in to over 50 in our current analysis. Much of the clade remains poorly resolved but we resolve a number of clear, ...

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