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5: Fruiting bodies of Agrocybe praecox on a leaf-litter pile in the Central Park of Helsinki, Finland (photo Kari Steffen). 

5: Fruiting bodies of Agrocybe praecox on a leaf-litter pile in the Central Park of Helsinki, Finland (photo Kari Steffen). 

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Tiivistelmä: Karikkeenlahottajasienet vaikeasti hajoavien biopolymeerien ja ympäristömyrkkyjen hajottajina. Diss. -- Helsingin yliopisto.

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... fungal strains used in the experiments are listed in Table 4.1 (see Appendix for trivial names). All strains designated with the letter “K” were isolated by the author from Finnish forests or grasslands and are deposited at the Culture Collection of the Department of Applied Chemistry and Microbiology at the University of Helsinki (Finland). In addition, other strains were obtained from the German Collection of Microorganisms in Braunschweig (DSMZ, Germany) or from the former Culture Collection of the Institute of Microbiology at the University of Jena (Germany), which is in part continued at the International Graduate School in Zittau (Germany). Information on the culture conditions are published in all articles (I-V). The following LDF were studied in more detail: Agrocybe praecox (I, II, IV), Collybia dryophila (III), Stropharia coronilla (I, II, IV, V), and Stropharia rugosoannulata (I, IV). Collybia dryophila was not originally part of the original screening (I) and was later chosen (III) because of abundance of this species and its ecological impact in the environment. Agrocybe praecox (Pers.: Fr.) Fayod (Fig. 1.5) is a typical medium sized agaric (fruiting body 4-9 cm hight, cap 3-6 cm broad) with a cream cap, light brown gills and a ring on the stem. It occurs on soil among grass, sometimes on rotten straw, in thickets and woodland edges. Fruiting bodies are produced in summer and autumn and the fungus is widely distributed across Europe and Northern America. Collybia dryophila (Bull.: Fr.) Kummer (formerly Gymnopus dryophilus ; Fig. 1.6) is a smaller agaric with a pale tan cap, whitish gills, and stem fl ushed tan. The species is found in small groups on soil and leaf litter under broad-leaf and coniferous trees. Fruiting bodies appear from spring to winter with a peak in summer and autumn and the fungus is very common in Europe and Northern America. Stropharia coronilla (Bull.: Fr.) Quelet (Fig. 1.2) is a smaller agaric with a pale-yellow cap, white stem with a ring, and pale lilac-grey gills. It grows solitary among grasses on pastures and meadows fruiting in spring-summer time. The species is infrequently found in Northern America and Europe. Stropharia rugosoannulata Farlow (Fig. 1.3 and 1.4) is a large sized (cap up to 20 cm broad) fl eshy agaric with a brownish or yellow cap, robust white stem with a ring, and violet-brown gills. The fungus prefers to grow on straw or rotting straw but forms fruiting bodies often when it comes in contact with soil. Fruiting bodies occur in summer and autumn. Stropharia rugosoannulata is a commercially cultivated mushroom in several European ...
Context 2
... that colonize soil-litter, in particular litter-decomposing fungi (LDF), include basidiomycetes and ascomycetes living in the upper most portion of the soil and in the humus layer of forests and grasslands. In general, the decomposition of litter is brought about by combined activities of bacterial, fungal and animal populations, but basidiomycetous LDF are particularly important organisms because of their production of a wide range of ligninocellulolytic enzymes (Dix and Webster 1995). Many litter-decomposing fungal species are widely distributed in northern temperate forests although not associated with any particular soil type. The presence of specifi c taxa varies with the type of litter available. Basidiomycetous litter-decomposers most commonly belong to the order Agaricales , but there are also basidiomycetes in other orders, e.g. Boletales and Poriales . Additionally many macroscopic fruiting body forming ascomycetes (e.g. Gyromitra spp.) can be considered as LDF in a broader sense. Around 14 000 to 16 000 species of basidiomycetes are known (Hawksworth et al. 1995, Watkinson et al. 2000). The order of Agaricales comprises around 6 000 spp. Fungi in this order are commonly called mushrooms, toadstools, gill fungi, or agarics (Hawksworth et al. 1995). They are also referred to as being terrestrial, lignicolous, saprobic, or mycorrhizal. LDF are found in several families, e.g. Agaricaceae (~ 600 spp. total including Agaricus spp.), Bolbitiaceae (~ 150 spp. total including Agrocybe spp.), Coprinaceae (~720 spp. total including Coprinus spp.), Strophariaceae (~220 spp. total including Stropharia spp.; Fig. 1.2, 1.3, and 1.4), and Tricholomataceae (~150 spp. total including Clitocybe spp., Collybia spp., Lepista spp., Marasmius spp., Mycena spp.). The gilled wood-decayers Pleurotus spp. on the other hand belong to the order Poriales and the family Lentinaceae (~145 spp.). The major basidiomycetous genera which decompose litter in forests include Clitocybe spp., Collybia spp. (Fig. 1.6), Mycena spp., Marasmius spp., Hydnum spp., Tricholoma spp., and in agricultural areas (meadows e.g.) Agaricus spp., Agrocybe spp. (Fig. 1.5), Psilocybe spp. and Coprinus spp. Furthermore there are species in overlapping groups between wood-decaying and LDF including the wood-decayers Hypholoma spp. ( Nematoloma spp.), Pleurotus spp., Armillaria spp., and the straw-decomposing fungi such as Stropharia rugosoannulata . Some species, such as Auriscalpium vulgare , show substrate specifi city while others grow on a wide range of material, such as Clitocybe nebularis , Collybia bytrycea , or Mycena galopus (Dix and Webster 1995). Though the term litter is normally associated with discarded cans, plastic wrappings, and other anthropogenic waste, in this work it is applied to plant or forest debris and other material that has a more biological origin. Thus forest litter comprises of dead leaves, needles, twigs, branches, roots, and the remains of insects, bacteria, fungi, and animals. This layer is generally present on the soil surface and can be clearly distinguished from the underlying mineral layers. From a chemical point of view this habitat consists of a diverse spectrum of carbohydrates, mainly lignocellulose and in older fractions humic substances (HS) (see also section 1.5). Plant litter is itself composed of six main categories of chemical constituents: (1) cellulose, (2) hemicellulose, (3) lignin, (4) water-soluble sugars, amino acids, and aliphatic acids, (5) ether- and alcohol-soluble constituents including fats, oils, waxes, resins, and many pigments, and (6) proteins (Satchell 1974). It is the soil-litter layer that provides a suitable habitat for LDF and it is often only 1-10 cm thick. These fungi grow over large distances in this layer to reach new substrate and their mycelium is therefore widely distributed. The mycelium can readily constitute up to 60% of the living biomass in 9 forest soils (Dix and Webster 1995). They often form fruiting bodies while moving forward and circles called fairy rings. Because LDF include saprotrophic basidiomycetes, nearly all constituents of the litter are open to degradation by these fungi. The lignocellulosic complex in particular includes lignin that is attacked by a number of enzymes including manganese peroxidase (MnP) and laccase (see also section 1.3). The ability to break down lignin and cellulose enables some of the LDF to function as typical “white-rot fungi” in soil (Hofrichter 2002, see below). Thus the degradation of lignin and derived humic material can generate white-rot humus (Hintikka 1970). LDF can also produce other hydrolytic and oxidative enzymes, e.g. Lepista nuda produces phosphatase, protease, cellulase, β-xylosidase, β-glucosidase, and phenol oxidase (Colpaert and vanLaere 1996). LDF seem to release nitrogen during the decomposition of leaf litter (Colpaert and vanTichelen 1996) but tend to accumulate different metals and heavy metals (Rajarathnam et al. 1998). As such, it is clear that the impact of this fungal group is extremely important in forest and grassland ecosystems. Litter production in forests ranges from around 1.5-1.8 tons hectar -1 year -1 in Finnish birch ( Betula spp.) stands and up to 15 tons hectar -1 year -1 in tropical rain forests (Jensen 1974). Without the activity of LDF we, and forests, would in time be buried by cast off leaves and branches. Litter is often colonized by LDF during the fi nal stage of decay and therefore the accumulation of recalcitrant material (mainly the lignin component of litter) is minimized. This makes LDF one of the most active degraders of tree leaf litter that has major implications for recycling of carbon in soil (Dix and Webster 1995). From an eco-physiological point of view, basidiomycetes that form macroscopic fruiting bodies can be broadly classifi ed into wood-decaying, mycorrhiza-forming, and litter-decomposing fungi (Fig. 1.1). Wood-decomposing fungi colonizing dead or dying tree trunks and stumps utilize cellulose while modifying the hemicellulose and lignin constituents cause either brown-rot or, more commonly, white-rot via the utilization of hemicellulose and cellulose during the degradation of lignin. However, unlike mycorrhiza- forming fungi, wood-decaying fungi do not actively colonize soil. Mycorrhizal fungi form a symbiotic relationship with the roots of trees and other plants and provide them with better access to water and nutrients in return for host carbon assimilates. Until recently, they were believed not to exhibit the saprotrophic capabilities of litter-decomposing or wood-decaying fungi, although genes of ligninolytic enzymes and their expression have now been detected (Chen et al. 2001, Chen et al. 2003). Litter-decomposing fungi and mycorrhizal fungi co- exist and interact in soils. There are, of course, overlapping habits in the three main eco-physiological groups of fungi. Some wood-decayers (e.g. Hypholoma spp.) are also capable of colonizing soil from bases such as wood debris, while other LDF grow on straw (e.g. Stropharia rugosoannulata ; Fig. 1.3 and 1.4), which is usually only favored by wood-decaying fungi. Finally, there is an indication that some mycorrhizal fungi, such as Paxillus involutus , could be facultative mycorrhiza formers that switch between a saprotrophic and symbiotic habit and being thus able to degrade lignin to some extent (Haselwandter et al. ...

Citations

... In addition, many studies have confirmed that the nutrient-rich plant residues usually transfer N to the other plant residues in mixture by hypha, to help their decomposition, and thus improving the overall decomposition rate of mixtures (Kou et al., 2020a). As fungi can connect different substrates across a certain distance (Steffen, 2003), they might also cause nutrient transfer between different waste fragments in this study, accelerate their overall decomposition, and thus promoting their nutrient release, the growth of microbial degraders, and consequently, the degradation of contaminants. In Figure 4C, we found increasing chemical dispersion of mixed wastes favored their synergistic effect on contaminates degradation, which corroborated the mentioned hypothesis. ...
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In this study, greenery wastes of Platycladus orientalis (Po) and the other 5 species which are commonly used in urban landscaping were collected. Monospecific greenery wastes and their 1:1 mixtures containing Po waste were used to treat contaminated soil with a petroleum content of 15.00 g/kg, to conduct a 150-day laboratory remediating experiment at 20-25℃, under a soil moisture of 50% of the saturated water holding capacity. The effects of mixed addition of greenery wastes on their re-mediating effects on contaminated soil were detected, to provide scientific basis for the reasonable utilization of greenery waste in contaminated soil remediation. The results indicated that: (1) Mixed addition of Po waste with Picea asperata (Pa), Acer truncatum (At), Ginkgo biloba (Gb) or Juniperus formosana (Jf) waste significantly enhanced their effect of removing petroleum contaminants, espe-cially for removing aromatic and non-hydrocarbon substances; while the mixed addition of Po waste with Pinus tabuliformis (Pt) waste significantly weakened their remediating effects. The mixed addition of Po waste with Gb or Jf waste significantly enhanced their effects of replenishing soil available N and P; the mixed addition of it with Pa, Pt, Gb or Jf waste tended to enhance their effects of stimulating the activities of soil invertase, urease, phosphatase and dehydrogenase, while the mixed of it with At waste tended to weaken their simulating effects. (2) Mixed litters with high contents of C, N, terpenoids and amino acids, and chemical dispersion facilitated the degradation of petroleum contaminants, while those with high contents of soluble saccharides and total organic acids/terpenoids led to contrast effects; mixed litters with high N content facilitated the increment of soil enzymatic activities, while those with high contents of total organic acids and terpenoids led to contrast effects. In conclusion, mixed addition of Po and Jf, Po and Gb, and Po and Pa wastes might enhance their overall remediating effects on petroleum contaminated soil, while mixed addition of Po and Pt wastes might weaken their ability of removing the contaminants, and this mixing form of greenery wastes should be avoided.
... A high level of polycyclic aromatic hydrocarbon biodegradation was reported for such fungi as Xerotus discolor (Acevedo et al., 2011), Bjerkandera species (Matsubara et al., 2006), Irpex lacteus (Bhatt et al., 2002;Cajthaml et al., 2006), Phellinus sp. (Arun and Eyini, 2011), Schizophyllum commune Fr (Matsubara et al., 2006), Stropharia coronilla (Steffen, 2000). Pentachlorophenol can be degraded by Agrocybe perfecta, T. villosa (Sw.) (Machado et al., 2005), T. hirsuta and Ceriporiopsis subvermispora (Lamar and Dietrich, 1990;, aromatic hydrocarbons (AH) can be remediated by Allescheriella sp. ...
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This review presents a comprehensive summary of the latest research in the field of bioremediation with filamentous fungi. The main focus is on the issue of recent progress in remediation of pharmaceutical compounds, heavy metal treatment and oil hydrocarbons mycoremediation that are usually insufficiently represented in other reviews. It encompasses a variety of cellular mechanisms involved in bioremediation used by filamentous fungi, including bio-adsorption, bio-surfactant production, bio-mineralization, bio-precipitation, as well as extracellular and intracellular enzymatic processes. Processes for wastewater treatment accomplished through physical, biological, and chemical processes are briefly described. The species diversity of filamentous fungi used in pollutant removal, including widely studied species of Aspergillus, Penicillium, Fusarium, Verticillium, Phanerochaete and other species of Basidiomycota and Zygomycota are summarized. The removal efficiency of filamentous fungi and time of elimination of a wide variety of pollutant compounds and their easy handling make them excellent tools for the bioremediation of emerging contaminants. Various types of beneficial byproducts made by filamentous fungi, such as raw material for feed and food production, chitosan, ethanol, lignocellulolytic enzymes, organic acids, as well as nanoparticles, are discussed. Finally, challenges faced, future prospects, and how innovative technologies can be used to further exploit and enhance the abilities of fungi in wastewater remediation, are mentioned.
... Lebih dari 30% tanaman tersusun atas lignin yang memberikan bentuk kokoh dan memberikan proteksi terhadap serangga dan patogen [7]. Selain memberikan bentuk yang kokoh pada tanaman, lignin juga membentuk ikatan yang kuat dengan polisakarida yang melindungi polisakarida dari degradasi mikroba dan membentuk struktur lignoselulosa [8]. Secara fisik Lignin membungkus mikrofibril dalam suatu matriks hidrofobik dan terikat secara kovalen dengan hemiselulosa. ...
Article
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Mahogany wood waste is a type of hard wood agricultural waste containing lignocellulose which is quite high. In mahogany wood waste also contains lignin which is quite high, so the level of lignin must be reduced so that the cellulose can be used as glucose. Phanerochaete chrysosporium is a type of mold that is able to degrade lignin, cellulose and hemicellulose simultaneously. The purpose of this study was to determine the effect of fermentation time and the addition of mahogany wood waste to the reduction of lignin content in the fermentation of mahogany wood waste using Phanerochaete chrysosporium molds. The study was conducted by drying and reducing the size of mahogany wood waste, then fermentation of mahogany wood waste with Phanerochaete chrysosporium with a span of 9, 11, 13, 15, and 17 days, and the addition of mahogany wood waste 5, 6 and 7%. Before and after the fermentation process, lignin levels were analyzed. The best results from this study were obtained at 17 days of fermentation and the addition of 5% mahogany wood powder, obtained a decrease in lignin content of 85,33 %.
... The organisms principally responsible for lignocelluloses degradation are aerobic filamentous fungi, and the most rapid degraders in this group are basidiomycetes (Kirk and Farrell, 1987). Wood-rotting basidiomycetous fungi are usually divided into white-rot, brown-rot and litter decomposing fungi (Steffen, 2003). White rot fungi are the most efficient ligninolytic microorganisms in nature. ...
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In present study wild mushrooms were collected from Shilly forest of Himachal Pradesh during rainy season. After collection samples were subjected for isolation of pure culture. Two samples were selected for detailed study on the basis of initial screening and different characteristics. Out of two one Stereum sp. was whire-rot fungi (WRF) and Postia sp. was brown-rot fungi (BRF). After molecular identification both mushrooms were identified as Postia placenta and Stereum hirsutum. Both mushrooms were further investigated for their extracellular enzymatic properties. Mycelial culture of both mushrooms were inoculated in Nutrient rich medium (NRM) and Nutrient poor medium (NPM) and incubated up to 20 days under shaking and static conditions at 25°C. Both mushrooms showed production of ligninolytic enzymes however Stereum hirsutum showed good production of enzymes in comparison to Postia placenta. The mechanism of biological wood decay is not only important ecologically due to its role in carbon cycle. The fundamental process has resulted in large number of potential applications in the pulp and paper industry. They have been investigated for use in mycoremediation applications.
... This enzyme performs as diffusible oxidant at sites apart from the enzyme active site and oxidizes Mn 2+ to chelated Mn +3 (Shin et al., 2005) MnP can be used in cell-free systems. Ultimately, the crude or purified MnP has shown the ability of oxidizing synthetic lignin compounds and chloro-lignin in addition to lignin (Steffen, 2003). ...
... These groupings depend on the type or morphology of rot they cause in the material (substrate). Thus we have white-rot, brown-rot and soft-rot fungi (Steffen, 2015). Of these groups, the white-rot fungi are the most rapid and extensive lignin degraders (Isroi et al., 2011;Yago et al., 2015). ...
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The agricultural industry is challenged with large tones of lignocellulosic wastes disposal which distort the aesthetical beauty of our environment. This study aimed at assessment of biodegradation potential of Pleurotus ostreatus (P. ostreatus) on some selected agro-wastes in Keffi, Nigeria. The samples (cassava peels (CP), banana leaves (BL), saw dust (SD), yam peels (YP) and groundnut shells (GS) were inoculated with equal proportions of Pleurotus ostreatus for a period of four weeks. The proximate composition, lignocellulosic content and the carbon-nitrogen ratio and pH of the substrateswere determined and compared. Significantly (P < 0.05) was an improvement of protein and crude fibre above the undegraded samples, and protein enhancement was highest in banana leaves (13.29%) and lest in saw dust (2.49%), crude fibre enhancement was highest in banana leaves (32.45%) and lest in yam peels (9.45%). The fungus also delignified the "wastes" with significant (P < 0.05) reduction in the lignin, cellulose and hemicellulose contents. Lignin for instance reduced by 50.00% in CP, 39.49% in BL, 25.58% in SD, 39.12% in YP and 28.19% in GS; Cellulose reduced by 21.32% in CP, 10.57% in BL, 10.93% in SD, 26.44% in YP and 15.88 in GS; Hemicellulose reduced by 21.04% in CP, 18.06% in BL, 15.29% in SD, 26.16% in YP and 26.32% in GS while Fibre reduced by 27.92% in CP, 27.13% in BL, 21.75% in SD, 28.44% in YP and 21.23% in GS.
... Menurut Akhtar et al. (1997), Li-P mengoksidasi inti aromatik (fenolik dan non-fenolik) melalui pelepasan satu elektron menghasilkan radikal kation dan fenoksi. Seperti halnya Li-P, Mn-P juga merupakan heme peroksidase ekstraseluler, hanya saja enzim ini membutuhkan Mn 2+ sebagai substrat pereduksinya (Steffen, 2003). Selanjutnya dijelaskan bahwa Mn-P mengoksidasi Mn 2+ menjadi Mn 3+ yang kemudian mengoksidasi struktur fenolik menjadi radikal fenoksil (Cui dan Dolphin., 1990). ...
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This study aims to determine the effect of urea supplementation on substrate to the change percentage content of crude fibre component of sawdust as the yield of bioconversion by Pleurotus ostreatus with 40 days incubation period. The design used was Complete Random Design (CRD) with 4 levels of urea that is P<sub>0</sub> = sawdust substrate + 0% urea; P<sub>1</sub> = sawdust substrate + 0.5% urea; P<sub>2</sub> = sawdust substrate + 1% urea; P<sub>3</sub> = sawdust substrate + 1.5% urea;and P<sub>4</sub> = sawdust substrate + 2% urea, with 3 replicates at each treatment. The parameters observed were the change percentage content of Neutral Detergent Fibre (NDF), Acid Detergent Fibre (ADF), hemicellulose, cellulose, and lignin. From the observation on the growth of myceliumseen on P2 is the best. The percentage decrease in the content of all fiber components in P2 is the highest. Analyzed data using analysis of variance, showed that urea supplementation had significant effect (P <0,05) to the change percentage content of Neutral Detergent Fibre (NDF), Acid Detergent Fibre (ADF), hemicellulose, cellulose, and lignin. Bioconversion of sawdust by Pleurotus ostreatus with level of urea supplementation 1% yields the highest of the change percentage content of crude fibre component.
... Ikatan yang dapat dihidrolisis hanya sedikit karena strukturnya heterogen dan kompleks. Lignin akan berhubungan dengan ikatan yang berbeda dan senyawa ini terkonsentrasi pada bagian lamella tengah serta lapisan dinding sel yang terbentuk pada proses lignifikasi yang terjadi pada jaringan tanaman (Steffen, 2003). Lignin dapat bertahan terhadap hidrolisis dikarenakan adanya ikatan aril eter yang terdiri dari carbon-oxygen (ether) dan carbon-carbon (C-C) (Parthasarathi et al, 2011). ...
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Fungi can survive in various environments on different media including wood. Lignin in timber is hard to degrade efficiently because of its polymer form, and only a few of it can be hydrolyzed because of its composite and complex structure. Ligninolytic fungi produce an extracellular enzyme to withstand to toxic or mutagenic chemicals exposure and known to degrade different types of pollutant compounds. Lignin decomposers were also known to play a significant role in the pulping process of paper mills, used in waste treatment such as textile and hydrocarbon wastes. This study was conducted to obtain fungal isolates that have de-lignification capability and to compare the ability of fungal isolates to degrade lignin. The research isolated samples from rotten wood and soil using selective lignin medium with tannic acid as sole C source. This study characterized the isolates by its morphology and identified using the Morphology and Taxonomy of Fungi book by Bessey (1950) as a reference. This study compared the ligninolytic capability by measuring the transparent zone formed on selective lignin media. This research found 14 isolates of fungi and all of them had a ligninolytic capability. Aspergillus niger isolate has the highest ligninolytic capability by producing 6.45 cm clear zone diameter on the 7th day. Aureobasidium sp has the smallest clear zone diameter of 1.9 cm within the same period.
... Erkurt et al. [114] showed decoloration of various dyes by P. ostreatus. Bisphenol A was degraded by the same species as reported by Hirano et al. [115] Psilocybe sp. was reported to degrade pyrene by da Silva et al. [116] while another Psilocybe species degraded hexachlorobenzene, according to Matheus et al. [102] Schizophyllum commune Fr. degraded PAH as reported by Matsubara et al. [82] Steffen [117] showed PAH degradation by Stropharia coronilla (Bull.) Qu el. ...
Article
The literature on hydrocarbon remediation with basidiomycetes was reviewed. Two ecological groups are considered for bioremediation, the saprotrophic basidiomycetes (white-rot and brown-rot fungi) and the ectomycorrhizal basidiomycetes. A remarkable capacity of basidiomycetes for in vitro degradation of simple and recalcitrant hydrocarbons, such as PAH, persistent organic pollutants (POPs), halogenated HC, aromatic HC and phenols, explosives and dyes was reported for many species. However, there is a need for more studies on the practical feasibility of field applications with basidiomycetes.
... Pleurotus cystidiosus, Schizophyllum commune strain 9034, Schizophyllum commune strain 6328, and Phlebiopsis gigantea were chosen for this study (Arun et al. 2014 for Schizophyllum, Bhattacharya et al. 2014 for Pleurotus, Steffen 2003, andValentín et al. 2013 for Phlebiopsis [ Table 1]). Pleurotus cystidiosus is an oyster mushroom commonly used in mycoremediation, S. commune-9034 and S. commune-6328 are two strains of split gill mushroom, and P. gigantea is a saprotrophic fungus used as a biocontrol agent against root rot in conifers and is considered to be the most widely distributed fungus in nature. ...