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FDA and NMPA approved small molecular inhibitors for ALK-positive NSCLC

FDA and NMPA approved small molecular inhibitors for ALK-positive NSCLC

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The presence of anaplastic lymphoma kinase (ALK) rearrangement defines a molecular subtype of non-small-cell lung cancer (NSCLC). ALK inhibitors confer significant clinical benefits in patients with ALK-positive advanced NSCLC; therefore, it is of great clinical significance to select accurate, rapid, and appropriate ALK testing methods to screen f...

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... resistance mechanisms include (i) secondary mutations in ALK kinase domain 56-59 ; (ii) ALK copy number gain 60-62 ; and (iii) bypass activation of alternative oncogenic pathways, such as EGFR, KRAS, IGF-1R, and KIT 63-65 . The first generation of small molecular ALKI, crizotinib and the second generation of ceritinib, alectinib, brigatinib, and ensartinib target both treatment naïve and crizotinib-resistant patients with acquired mutations; furthermore, the third ALKI lorlatinib showed efficacy to overcome the resistance of previous ALKIs ( Table 2 ) [66][67][68] . In addition, the possibility of rechallenging therapies may occur when lorlatinib-resistant patients developed an ALK L1198F mutation, and the patient was subsequently re-treated with crizotinib obtaining again disease remission 69 , 70 . ...

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... These "non-functional" rearrangements might indicate ALK fusions by fluorescence in situ hybridization (FISH) (10). There are also some guidelines and expert consensus that DNA-seq NGS may identify atypical or intergenic fusions (11). Another case of an antisense rearrangement of ALK was previously reported, in which a complex tripartite rearrangement involving multiple DNA fusion junctions was formed between YY1P2 downstream, EML4, and ALK. ...
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Next-generation sequencing technology has enabled the identification of fusion partners of anaplastic lymphoma kinase (ALK) in non-small cell lung cancer, and various ALK fusion partners have been confirmed. Here, a novel rhabdomyosarcoma 2-associated transcript (RMST)-ALK rearrangement was identified in an 80-year-old Chinese man with advanced lung adenocarcinoma. The patient was prescribed ceritinib and achieved a partial response, which has been sustained for more than 18 months. This is the first report of the RMST-ALK rearrangement, and we showed that a patient with lung adenocarcinoma carrying this rearrangement can benefit from ceritinib treatment; therefore, this is a significant finding in clinical practice.
... A recent clinical study demonstrated promising results with high response and complete resection rates with ALK TKI as neoadjuvant therapy in 11 patients with stage I-IIIa ALK-rearranged NSCLC [44]. Our study supports the clinical use of DNA-NGS for detecting ALK rearrangements in lung cancer as recommended by the Chinese RATICAL study [45]. ...
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Next-generation sequencing (NGS) is rapidly becoming routine in clinical oncology practice to identify therapeutic biomarkers, including gene rearrangements in anaplastic lymphoma kinase (ALK). Our study investigated the concordance of ALK positivity evaluated by DNA-based NGS with orthogonal ALK testing methods such as fluorescence in situ hybridization (FISH), immunohistochemistry (IHC), and RNA-based NGS (RNA-NGS). Thirty-eight patients with lung adenocarcinoma who were detected with ALK rearrangements using DNA-NGS and also had adequate tissue samples submitted for FISH, IHC, and RNA-NGS, were included in this study. Of the 38 patients, RNA samples from 3 patients failed quality control for RNA-NGS. The concordance of ALK positivity was calculated relative to DNA-NGS results. The concordance rates were 97.1% (34/35) for RNA-NGS, 94.7% (36/38) for IHC, and 97.4% (37/38) for FISH. DNA-NGS detected single ALK rearrangements in 14 (35.0%) patients and complex ALK rearrangements in 26 (65.0%). RNA-NGS detected only single transcripts of the primary ALK fusions. A novel LANCL1-ALK (L7:A20) detected using DNA-NGS was detected as EML4-ALK (E13:A20) transcripts using RNA-NGS. Interestingly, patients with single ALK rearrangements were more likely to be detected with atypical isolated red signals (p < 0.001), while patients with complex ALK rearrangements were more likely to be detected with atypical split red and green signals less than 2 signal diameters apart (p < 0.001). Our study highlights the reliability of NGS in the accurate detection of specific ALK fusion variants and concomitant mutations that are crucial for individualized treatment decisions in patients with lung cancer.
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Anaplastic lymphoma kinase (ALK) is the most common fusion gene involved in non-small cell lung cancer (NSCLC), and remarkable response has been achieved with the use of ALK tyrosine kinase inhibitors (ALK-TKIs). However, the clinical efficacy is highly variable. Pre-existing intratumoral heterogeneity (ITH) has been proven to contribute to the poor treatment response and the resistance to targeted therapies. In this work, we investigated whether the variant allele frequencies (VAFs) of ALK fusions can help assess ITH and predict targeted therapy efficacy. Through the application of next-generation sequencing (NGS), 7.2% (326/4548) of patients were detected to be ALK positive. On the basis of the adjusted VAF (adjVAF, VAF normalization for tumor purity) of four different threshold values (adjVAF < 50%, 40%, 30%, or 20%), the association of ALK subclonality with crizotinib efficacy was assessed. Nonetheless, no statistical association was observed between median progression-free survival (PFS) and ALK subclonality assessed by adjVAF, and a poor correlation of adjVAF with PFS was found among the 85 patients who received first-line crizotinib. Results suggest that the ALK VAF determined by hybrid capture-based NGS is probably unreliable for ITH assessment and targeted therapy efficacy prediction in NSCLC.