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Examples of data from two species, one showing a significant change, the other not. The bars show the actual data, while the curves show the fitted Poisson distribution. The LR test evaluates the similarity of the two distributions.  

Examples of data from two species, one showing a significant change, the other not. The bars show the actual data, while the curves show the fitted Poisson distribution. The LR test evaluates the similarity of the two distributions.  

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Coral reef fish communities in the Seychelles are highly diverse and remain less affected by the direct impacts of human activities than those on many other coral reefs in the Indian Ocean. These factors make them highly suitable for a detailed survey of the impacts of the 1998 mass coral mortality, which devastated the coral faunas of the region....

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... more detailed analysis of the population changes for individual species data was undertaken for the subgroup using the methods described. Fig. 4 illustrates the general approach underlying such tests for two ...

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... A mix of granitic and carbonate islands, the coral reefs of the Seychelles were severely affected by temperatureinduced mass coral bleaching events in the past decades (Spencer et al. 2000;Engelhardt 2004;Graham et al. 2006). Coral reefs around these islands are mostly fringing and shallow patch reefs (Spalding and Jarvis 2002), which frequently exposes them to elevated sea temperatures, often caused by El Niño events and the Indian Ocean Dipole. In 1998, these two phenomena coincided, causing an extended positive sea-surface temperature anomaly, which lasted for several weeks. ...
... In 1998, these two phenomena coincided, causing an extended positive sea-surface temperature anomaly, which lasted for several weeks. The mass coral bleaching event, which ensued, caused over 90% coral mortality (Turner et al. 2000;Spalding and Jarvis 2002). Prior to the 1998 bleaching event, coral cover ranged from 35 to 80% and was dominated by branching Acropora corals (Turner et al. 2000). ...
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Climate-induced mass bleaching events are one of the greatest threats to coral reefs, causing widespread loss of coral cover. Drivers of recovery and adaptation for coral reefs in the face of repeated large-scale disturbances are unclear, with marked differences across geographies. Using a monitoring dataset lasting from 2005 to 2018, we documented the response of coral reefs of northwest Mahé in the granitic Seychelles islands following the 1998 and 2016 mass bleaching events. We analysed trends in coral cover, coral community composition and key fish trophic group densities for 24 sites. Coral cover increased almost fourfold from 2005 to 2015 with 42.1% mean coral cover in 2015, highlighting a recovery from the 1998 bleaching event dominated by Acropora growth forms. Impacts of the 2016 bleaching event were less acute than the 1998 one. However, following the 2016 bleaching event, coral cover significantly decreased to 16.1% mean cover in 2017, marked by a sharp decrease of Acropora corals and branching growth forms. Corallivorous, herbivorous and piscivorous fish densities were positively correlated with coral cover from 2005 to 2016. These findings highlight the dominant role of Acropora in recovery from mass coral bleaching events. It also shows the importance of time-series datasets in understanding coral recovery dynamics and their use in an integrated management approach to building reef resilience.
... In addition to the corals themselves, research on the effects of marine heatwaves has also focused heavily on fishes [37][38][39][40][41][42][43][44][45][46][47][48], which are also typically included in coral reef monitoring efforts. However, studies have almost completely ignored the myriad of small, cryptic, species, which make up a disproportionate amount of coral reef biodiversity [49][50][51]. ...
... Large hosts, like many reef fishes, can also leave areas of warm water for cooler water, or leave habitat impacted by coral bleaching for other habitats [39,40,[43][44][45][46]147], depriving gnathiids and other similar ectoparasites, like natatory-stage cymothoid isopods of hosts [148]. The potentially impaired physiological and swimming ability of the parasite, combined with direct effects on mortality and host availability, could result in a decline in parasite populations. ...
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... (7)(8)(9)(10), anthropogenic by use of destructive fishing gears (e.g. [5,[10][11]) or natural through, e.g., Crown-of-Thorns starfish infestations [12], storms and cyclones [13][14][15], or bleaching [16][17][18][19][20]). Several fish species are strongly associated with live coral cover (e.g. ...
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... Despite a slight reduction in effort in relation to the number of boats since 1991, the CPUE has not shown signs of recovery in the small-scale fisheries ( Figure 5A). The stable low CPUE since 1985 for small-scale sectors could be associated with shifting the targeted demersal species to those previously less exploited or an overall demersal stock depletion (Jennings et al., 1995;SFA, 1996;Nageon and de Lestang, 1998;Spalding and Jarvis, 2002). Since the mid-1980s, fishing effort has steadily increased while CPUE has declined. ...
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The adoption of sovereign blue bonds by the Republic of Seychelles, hereafter referred to as Seychelles, focuses on resource sustainability and illustrates options for island countries to use their ocean resources for years into the future. The fishing industry is one of the main pillars of Seychelles’ economy and is of crucial importance for domestic food- and employment-security. In order to promote long-term ecological sustainability and economic viability of domestic fisheries, accurate and long-term baseline information is required. Such baseline data were derived here with a reconstruction of the Seychelles’ domestic fisheries catches and fishing effort within its Exclusive Economic Zone (EEZ) from 1950 to 2017, coupled with resulting Catch Per Unit Effort data (CPUE). The total reconstructed domestic catch was approximately 1.5 times larger than the baseline as reported by the United Nations Food and Agriculture Organization (FAO) on behalf of Seychelles from 1950 to 2017 after adjustment for fully domestic catches within the EEZ. Domestic catches (i.e., excluding the large-scale industrial pelagic catches) increased by over 500% throughout the time period, growing from 1,900 t⋅year⁻¹ in the 1950s to around 11,200 t in 2017. The major targeted taxa were jacks (Carangidae), tuna-like fishes (Scombridae) and snappers (Lutjanidae). Total fishing effort in the form of fishing capacity grew from 21,500 kWdays in 1950 to over 3.4 million kWdays in 2017. The resultant artisanal CPUE displayed a declining trend over time, suggesting a potential decline in relative abundance of fish populations within the Seychelles EEZ or targeted fishing areas.
... Our analysis revealed that the decrease in the density of corallivores and herbivores matched with the decrease in coral cover following mass bleaching, while changes in species richness were not correlated with a coral cover change. Such a short-term decline in corallivores was common in the Great Barrier Reef following the 2016 mass bleaching (Stuart-Smith et al. 2018) and at Ishigaki Island and other sites during the 1998 bleaching event (Kokita and Nakazono 2001;Sano 2004;Shibuno et al. 1999;Spalding and Jarvis 1998), while response of herbivores varied from place to place. As described above, all of the potential stocks (fisheries production, aquarium fish production, recreational diving, and seaweed control by herbivores) decreased following the bleaching. ...
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... Coral cover and species richness are expected to be particularly important in explaining the diversity and abundance of obligate coral-dwelling species (Munday et al. 1997;Munday 2002;Gardiner and Jones 2005) and corallivorous fishes (Bell and Galzin 1984;Kokita and Nakazono 2001;Spalding and Jarvis 2002;Pratchett et al. 2006). In the recent years there have been extensive declines in coral cover on many tropical reefs around the world due to various extreme events, such as frequent severe cyclones, coral bleaching and crown-ofthorns outbreaks (Pandolfi et al. 2005;De'ath et al. 2012;Cheal et al. 2017;Hughes et al. 2017). ...
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Habitat characteristics play an important role in determining the structure of fish communities. The decline in fish diversity and abundance with the decline in coral diversity and cover may be explained by habitat specialisation and partitioning among reef fishes and/or preferences for particular corals that are susceptible to disturbance. These preferences may develop at different life history stages. Here, we investigated patterns of habitat specialisation and ontogenetic shifts in habitat preference among 14 co-existing damselfish species at Lizard Island lagoon on the Great Barrier Reef. Although live coral cover contributed only 26% of the substratum, 28% of adults and 57% of new settlers were mostly found on live coral, indicating a strong preference for live coral habitat by new settlers. Only a few species exhibited a high degree of habitat specialisation and low overlap in habitat use with other species. Specialisation differed among species and life stages. New settlers were more commonly associated with finely branched corymbose corals and using those habitats with higher frequency than expected based on habitat availability alone. Adults were more commonly linked to more open branching morphologies or non-coral substrata. Our results suggest that habitat loss may not uniformly impact on all life stages. While adult individuals may not be as reliant as juveniles on corals, detrimental effects of habitat loss on juvenile survival may have longer-term impacts on adult populations. As juveniles show preferential associations with particular coral species, such as corymbose corals, the loss of these growth forms is likely to have the most significant negative impacts on this critical life history stage.
... Butterflyfishes are highly associated with live coral reefs, as the latter provide food for both, obligate and facultative corallivorous species (Pratchett et al., 2015). Some studies have demonstrated that coral-dependent species are affected early by habitat loss, as many of them migrate or die during and after events that cause reductions in LCC (Russ & Leahy, 2017;Spalding & Jarvis, 2002). For this reason, the reduction of chaetodontids in response to LCC decline has been highlighted as one of the first symptoms of coral reef degradation (Flower et al., 2017). ...
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Benthic structure of coral reefs determines the availability of refuges and food sources. Therefore, structural changes caused by natural and anthropogenic disturbances can have negative impacts on reef‐associated communities. During the 1990s, coral reefs from Bahía Culebra were considered among the most diverse ecosystems along the Pacific coast of Costa Rica; however, recently they have undergone severe deterioration as consequence of chronic stressors such as El Niño‐Southern Oscillation and harmful algal blooms. Reef fish populations in this area have also been intensely exploited. This study compared reef fish assemblages during two periods (1995–1996 and 2014–2016), to determine whether they have experienced changes as a result of natural and anthropogenic disturbances. For both periods, benthic composition and reef fish abundance were recorded using underwater visual censuses. Live coral cover (LCC) decreased from 43.09 ± 18.65% in 1995–1996 to 1.25 ± 2.42% in 2014–2016 (U = 36, p < 0.05). Macroalgal cover (%) in 2014–2016 was sixfold higher than mean values reported for the Eastern Tropical Pacific region. Mean (±SD) fish species richness in 1995–1996 (36.67 ± 14.20) was higher than in 2014–2016 (23.00 ± 9.14; U = 20, p < 0.05). Over 40% of reef fish orders observed in 1995–1996 were not detected in the 2014–2016 surveys, including large‐bodied predators. Reduction in abundance of fish predators such as sharks, grunts, and snappers is likely attributed to changes in habitat structure. Herbivorous such as parrotfishes and pufferfishes increased their abundance at sites with low LCC, probably in response to predators decline and increased algal cover. These findings revealed significant degradation and drastic loss of structural complexity in coral reefs from Bahía Culebra, which now are dominated by macroalgae. The large reduction in structural complexity of coral reefs has resulted in the loss of diversity and key ecological roles (e.g., predation and herbivory), thus potentially reducing the resilience of the entire ecosystem.
... In 1998 an El-Nino event coupled with the Indian Ocean Dipole (a similar phenomenon to El Nino but which occurs ahead of El Nino events (Graham et al., 2006), resulted in both the highest seawater temperature anomaly recorded in 50 years and widespread coral mortality worldwide; affecting most severely the reefs of the Indian Ocean (Sheppard et al., 2005). At a regional level, mortality was recorded at 30% (Obura, 2005), with a reduction of live coral cover as much as 80-95% at the most heavily impacted reefs, of which those were amongst the Seychelles (Spencer et al., 2000;Spalding and Jarvis, 2002). Within the inner granitic islands of Seychelles, the 1998 bleaching catastrophe decreased the coral cover to less than 3% in some areas, leaving no depth refuge from coral mortality (Graham et al., 2006. ...
... Within the inner granitic islands of Seychelles, the 1998 bleaching catastrophe decreased the coral cover to less than 3% in some areas, leaving no depth refuge from coral mortality (Graham et al., 2006. Shortly thereafter, a rapid algal-colonization was observed (Spalding and Jarvis, 2002), along with a gradual transformation of the impacted reefs into rubble and algaldominated communities, accompanied by a collapse in the structural complexity (Baker et al., 2008). During the following decade, recovery has been extremely slow in the inner granitic islands of Seychelles (Graham et al., 2006. ...
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Coral reef restoration is a subfield within the larger scientific discipline of ecological restoration (also known as restoration ecology). Ecological restoration is the process of assisting the recovery of an ecosystem that has been degraded, damaged, or destroyed (SER, 2018). Coral reef restoration must follow the four basic principles of planning and implementation of ecological restoration in order to increase sustainable and valuable outcomes (Suding et al. 2015): 1. Restoration increases ecological integrity. Restoration initiates or accelerates recovery of degraded areas by prioritizing the complexity of biological assemblages, including species composition and representation of all functional groups, as well as the features and processes needed to sustain these biota and to support ecosystem function; 2. Restoration is sustainable in the long term. Restoration aims to establish systems that are self-sustaining and resilient; thus, they must be consistent with their environmental context and landscape setting. Once a restoration project is complete, the goal should be to minimize human intervention over the long term. When intervention is required, it should be to simulate natural processes that the landscape no longer provides or to support traditional practices of local communities; 3. Restoration is informed by the past and future. Historical knowledge, in its many forms, can indicate how ecosystems functioned in the past and can provide references for identifying potential future trajectories and measuring functional and compositional success of projects. However, the unprecedented pace and spatial extent of anthropogenic changes in the present era can create conditions that depart strongly from historical trends. Often, then, history serves less as a template and more as a guide for determining appropriate restoration goals. 4. Restoration benefits and engages society. Restoration focuses on recovering biodiversity and supporting the intrinsic value of nature. It also provides a suite of ecosystem services (e.g., improved water quality, fertile and stable soils, drought and flood buffering, genetic diversity, and carbon sequestration) that enhance human quality of life (e.g., clean water, food security, enhanced health, and effective governance). Restoration engages people through direct participation and, thus, increases understanding of ecosystems and their benefits and strengthens human communities. We followed the four basic principles of ecological restoration when implementing our coral reef restoration project. These principles are summarized in a practical decision tool in the next section (Figure 1). We encourage readers of our Coral Reef Restoration Toolkit to follow the basic principles of ecological restoration in their own projects. As coral reef restoration scientists and practitioners, we were rewarded with the experience of bringing back life to a dead coral reef. We hope newcomers to the field of coral reef restoration and those already with some experience will benefit from reading and implementing our Toolkit, so they are also rewarded with successful outcomes. The Reef Rescuers Team Nature Seychelles, Mahe, Republic of Seychelles August 2018
... Diversos autores mencionan que posterior a un evento de mortalidad coralina, aproximadamente más del 30 % especies de peces exhiben cambios significativos en su abundancia con un rango de respuesta desde extinciones locales hasta decrementos e incrementos en la abundancia (Booth & Beretta, 2002;Spalding & Jarvis, 2002;Munday, 2004). Correspondiendo con lo anterior, el análisis empleado reveló que más del 46 % de especies en Maguey presentaron decrementos en la abundancia promedio posterior a la perturbación, destacando la ausencia de P. laticlavius, así como el decremento en la abundancia de 11 especies. ...
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Coastal development and urbanization have increased the sediments that are washed from the land surface, producing adverse effects on the structure and functioning of coral reefs. The objective of this study was to identify the degree to which excessive sediments have disturbed the fish community in the coral reefs in the Maguey and Violin bays, located in the Huatulco National Park (Mexico). Fish samples were collected before and after disturbances produced by sediments associated with coastal development projects. Indicators of changes in the fish communities included the number and diversity of species as well as equity and dominance before and after the disturbances. The analysis was performed through means comparison tests, similarity analysis (ANOSIM) and similarity percentage analysis (SIMPER). In both locations, it was observed that the diversity, evenness, abundance and number of species were higher prior to the disturbance, but not for dominance, which shows an inverse pattern. In Maguey, significant differences in evenness and dominance were observed (U = 28, p = 0.0401; U = 24, p = 0.0472), as well as in species composition and abundance (ANOSIM = 0.35, p = 0.009). The similarity percentage analysis (SIMPER) indicated that after the disturbance, more than 46 % of the species showed decreases in average abundance, highlighting the absence of Prionurus laticlavius, as well as the decrease in abundance of: P. punctatus, Cirrhitichthys oxycephalus, Microspathodon dorsalis, Lutjanus novemfaciatus and Stegates acapulcoensis. Inadequate planning and implementation of coastal development projects that contribute to the discharge of excessive sediments into the sea were determinants of negative changes in the coral communities in Maguey and Violin, whose effects could be seen in the composition of the species and the abundance, equity, and dominance of the fish community in Maguey.
... damselfishes, often exhibit pro- nounced decreases in abundance in response to bleaching and or habitat loss, a phenomenon that has been repeatedly documented across multiple spatial scales (e.g. Bellwood et al., 2006;Booth and Beretta, 2002;Ceccarelli et al., 2016;Halford et al., 2004;Jones et al., 2004;Pratchett et al., 2008a;Spalding and Jarvis, 2002;Wilson et al., 2008). Our results support this general pattern, yet they raise questions about our assumptions regarding the basis of this decline. ...
... Hence, short-term post-bleaching changes in the assemblages of reef fishes are often restricted to coral-dependent species (e.g. Riegl, 2002;Shibuno et al., 1999;Spalding and Jarvis, 2002). However, over time, dead coral skeletons are eroded by biological and physical agents. ...
Article
Record-breaking temperatures between 2015 and 2016 led to unprecedented pan-tropical bleaching of scleractinian corals. On the Great Barrier Reef (GBR), the effects were most pronounced in the remote, northern region, where over 90% of reefs exhibited bleaching. Mass bleaching that results in widespread coral mortality represents a major disturbance event for reef organisms, including reef fishes. Using 133 replicate 1 m2 quadrats, we quantified short-term changes in coral communities and spatially associated reef fish assemblages, at Lizard Island, Australia, in response to the 2016 mass bleaching event. Quadrats were spatially matched, permitting repeated sampling of fish and corals in the same areas: before, during and 6 months after mass bleaching. As expected, we documented a significant decrease in live coral cover. Subsequent decreases in fish abundance were primarily driven by coral-associated damselfishes. However, these losses, were relatively minor (37% decrease), especially compared to the magnitude of Acropora loss (>95% relative decrease). Furthermore, at a local, 1 m2 scale, we documented a strong spatial mismatch between fish and coral loss. Post-bleaching fish losses were not highest in quadrats that experienced the greatest loss of live coral. Nor were fish losses associated with a proliferation of cyanobacteria. Several sites did, however, exhibit increases in fish abundance suggesting substantial spatial movements. These results challenge common assumptions and emphasize the need for caution when ascribing causality to observed patterns of fish loss at larger spatial scales. Our results highlight the potential for short-term resilience to climate change, in fishes, through local migration and habitat plasticity.