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Different mechanisms of endosomal and autophagosomal PI3P formation. (A, B) GFP-FYVE marked PI3P-positive endosomes are absent from UVRAG mutant fat cell clones (dsRed-cells in panel A) of well-fed L3 larvae. However, starvation induces the generation of GFP-FYVE dots in UVRAG loss of function cells (dsRed-) in a similar number as in dsRed+ controls (B). (C-D) The number of GFP-FYVE positive endosomes is similar in well-fed Atg14 mutant clones (dsRed-) and dsRed+ control cells (C). In contrast, Atg14 mutant cells contain fewer GFP-FYVE dots than control cells under starvation conditons (D). (E) Starvation-induced formation of 3xmCherry-Atg8a labeled autophagic structures is similar in UVRAG null mutant clones (GFP+) and control cells (GFP-). (F) On the contrary, a complete inhibition of punctate 3xmCherry-Atg8a is observed in GFP+ Atg14 mutant cells compared to neighboring GFP-controls. (G, H) Quantification of data shown in A-D (G) and E-F (H); n=10/genotype. (I) Western blots reveal that UVRAG mutants show mild, while Atg14 mutants show strong accumulation of the autophagic cargo p62 both in well-fed and starved larvae. Tubulin serves as a loading control. Clone cells in grayscale panels of A-F are outlined in magenta. Scale bar in A equals 20 μm for A-F.  

Different mechanisms of endosomal and autophagosomal PI3P formation. (A, B) GFP-FYVE marked PI3P-positive endosomes are absent from UVRAG mutant fat cell clones (dsRed-cells in panel A) of well-fed L3 larvae. However, starvation induces the generation of GFP-FYVE dots in UVRAG loss of function cells (dsRed-) in a similar number as in dsRed+ controls (B). (C-D) The number of GFP-FYVE positive endosomes is similar in well-fed Atg14 mutant clones (dsRed-) and dsRed+ control cells (C). In contrast, Atg14 mutant cells contain fewer GFP-FYVE dots than control cells under starvation conditons (D). (E) Starvation-induced formation of 3xmCherry-Atg8a labeled autophagic structures is similar in UVRAG null mutant clones (GFP+) and control cells (GFP-). (F) On the contrary, a complete inhibition of punctate 3xmCherry-Atg8a is observed in GFP+ Atg14 mutant cells compared to neighboring GFP-controls. (G, H) Quantification of data shown in A-D (G) and E-F (H); n=10/genotype. (I) Western blots reveal that UVRAG mutants show mild, while Atg14 mutants show strong accumulation of the autophagic cargo p62 both in well-fed and starved larvae. Tubulin serves as a loading control. Clone cells in grayscale panels of A-F are outlined in magenta. Scale bar in A equals 20 μm for A-F.  

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The small GTPase Rab5 promotes recruitment of the Ccz1-Mon1 guanosine exchange complex to endosomes to activate Rab7, which facilitates endosome maturation and fusion with lysosomes. How these factors function during autophagy is incompletely understood. Here we show that autophagosomes accumulate due to impaired fusion with lysosomes upon loss of...

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... clarify the role of the Atg14 and UVRAG complexes during PI3P formation, we targeted the Atg14 locus using Cas9 mutagenesis. A 790 bp deletion was identified that begins 17 bp upstream of the start ATG, and deletes nearly the first half of the protein coding sequence (Figure S6A, B). Flies homozygous for this Atg14[d13] allele accumulated high amounts of the specific autophagic cargo p62, and mutant fat cell clones completely lacked LTR-positive autolysosomes ( Figure S6C, D), similar to previously described Atg mutants. ...
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... 790 bp deletion was identified that begins 17 bp upstream of the start ATG, and deletes nearly the first half of the protein coding sequence (Figure S6A, B). Flies homozygous for this Atg14[d13] allele accumulated high amounts of the specific autophagic cargo p62, and mutant fat cell clones completely lacked LTR-positive autolysosomes ( Figure S6C, D), similar to previously described Atg mutants. Importantly, the expression of an endogenous promoter-driven, C-terminally HA-tagged Atg14 transgene on the Atg14 mutant background suppresses the buildup of p62 (Figure S6C), indicating that the autophagy defect is solely due to loss of Atg14 in these animals. ...
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... homozygous for this Atg14[d13] allele accumulated high amounts of the specific autophagic cargo p62, and mutant fat cell clones completely lacked LTR-positive autolysosomes ( Figure S6C, D), similar to previously described Atg mutants. Importantly, the expression of an endogenous promoter-driven, C-terminally HA-tagged Atg14 transgene on the Atg14 mutant background suppresses the buildup of p62 (Figure S6C), indicating that the autophagy defect is solely due to loss of Atg14 in these animals. ...
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... used our new Atg14[d13] and the recently described UVRAG null mutant (Takats et al., 2014) alleles to test how these affect Vsp34 kinase activity and autophagy. UVRAG [LL] mutant fat cells showed a complete lack of PI3P under well-fed conditions ( Figure 6A, G), while starvation readily induced GFP-FYVE dots both in control and UVRAG loss of function cells (Figure 6B, G). Cells lacking Atg14 showed an opposite phenotype: the number of GFP-FYVE structures was not statistically significantly different from neighboring control cells in the fed state ( Figure 6C, G), whereas upon starvation the generation of PI3P- positive vesicles was strongly decreased in Atg14[d13] mutant clones ( Figure 6D, G). ...
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... used our new Atg14[d13] and the recently described UVRAG null mutant (Takats et al., 2014) alleles to test how these affect Vsp34 kinase activity and autophagy. UVRAG [LL] mutant fat cells showed a complete lack of PI3P under well-fed conditions ( Figure 6A, G), while starvation readily induced GFP-FYVE dots both in control and UVRAG loss of function cells (Figure 6B, G). Cells lacking Atg14 showed an opposite phenotype: the number of GFP-FYVE structures was not statistically significantly different from neighboring control cells in the fed state ( Figure 6C, G), whereas upon starvation the generation of PI3P- positive vesicles was strongly decreased in Atg14[d13] mutant clones ( Figure 6D, G). ...
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... [LL] mutant fat cells showed a complete lack of PI3P under well-fed conditions ( Figure 6A, G), while starvation readily induced GFP-FYVE dots both in control and UVRAG loss of function cells (Figure 6B, G). Cells lacking Atg14 showed an opposite phenotype: the number of GFP-FYVE structures was not statistically significantly different from neighboring control cells in the fed state ( Figure 6C, G), whereas upon starvation the generation of PI3P- positive vesicles was strongly decreased in Atg14[d13] mutant clones ( Figure 6D, G). We also tested whether the formation of 3xmCherry-Atg8a-positive structures is affected in UVRAG and Atg14 mutants. ...
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... [LL] mutant fat cells showed a complete lack of PI3P under well-fed conditions ( Figure 6A, G), while starvation readily induced GFP-FYVE dots both in control and UVRAG loss of function cells (Figure 6B, G). Cells lacking Atg14 showed an opposite phenotype: the number of GFP-FYVE structures was not statistically significantly different from neighboring control cells in the fed state ( Figure 6C, G), whereas upon starvation the generation of PI3P- positive vesicles was strongly decreased in Atg14[d13] mutant clones ( Figure 6D, G). We also tested whether the formation of 3xmCherry-Atg8a-positive structures is affected in UVRAG and Atg14 mutants. ...
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... also tested whether the formation of 3xmCherry-Atg8a-positive structures is affected in UVRAG and Atg14 mutants. In cells lacking UVRAG, the number of 3xmCherry-Atg8a dots was comparable to control cells ( Figure 6E, H), in line with our recent report. In contrast, autophagic structures were absent from Atg14 mutant fat cell clones (Figure 6F,H). ...
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... cells lacking UVRAG, the number of 3xmCherry-Atg8a dots was comparable to control cells ( Figure 6E, H), in line with our recent report. In contrast, autophagic structures were absent from Atg14 mutant fat cell clones (Figure 6F,H). We also tested the autophagosomal localization of Mon1 in wild type and mutant backgrounds to more directly support these findings. ...
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... also tested the autophagosomal localization of Mon1 in wild type and mutant backgrounds to more directly support these findings. As expected, we could detect the presence of Mon1-HA on endogenous Atg8a-positive autophagosomes in both control and UVRAG mutant fat cells (Figure S6E, F). In contrast, Atg14 mutant cells lacked endogenous Atg8a-positive autophagosomes, whereas Mon1-HA dots could still be observed ( Figure S6G). ...
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... expected, we could detect the presence of Mon1-HA on endogenous Atg8a-positive autophagosomes in both control and UVRAG mutant fat cells (Figure S6E, F). In contrast, Atg14 mutant cells lacked endogenous Atg8a-positive autophagosomes, whereas Mon1-HA dots could still be observed ( Figure S6G). ...
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... we tested the level of p62 in fed and starved larvae in two independent UVRAG null mutant lines as well as in Atg14[d13] homozygotes. We found large-scale accumulation of p62 in Atg14 mutants under both conditions (Figure 6I), altogether indicating that the Atg14 complex is required for PI3P-positive autophagosome formation. UVRAG loss of function lines showed a moderate increase of p62 compared with control animals ( Figure 6I). ...
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... found large-scale accumulation of p62 in Atg14 mutants under both conditions (Figure 6I), altogether indicating that the Atg14 complex is required for PI3P-positive autophagosome formation. UVRAG loss of function lines showed a moderate increase of p62 compared with control animals ( Figure 6I). These findings are consistent with our recent study, in which we showed that although the loss of UVRAG does not inhibit autophagosome formation or fusion, it impairs the lysosomal degradation of autophagic cargo (Takats et al., 2014), which is likely responsible for the increase in the amount of p62. ...

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