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Density scatter plots of in situ vs. satellite-retrieved Chl a for all algorithms providing meaningful values. The line of best fit (blue) and that of equal value (black) are superimposed, with relevant statistics.  

Density scatter plots of in situ vs. satellite-retrieved Chl a for all algorithms providing meaningful values. The line of best fit (blue) and that of equal value (black) are superimposed, with relevant statistics.  

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A 15-year (1997–2012) time series of chlorophyll a (Chl a) in the Baltic Sea, based on merged multi-sensor satellite data was analysed. Several available Chl a algorithms were sea-truthed against the largest in situ publicly available Chl a data set ever used for calibration and validation over the Baltic region. To account for the known biogeochem...

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... Satellites enable quantitative assessments of algal biomass (Harvey et al., 2015) that can be used as an ecological indicator (Platt and Sathyendranath, 2008) to understand the eutrophication effects. Recent studies indicate the potential of remote sensing to supplement and optimize marine monitoring programs (Harvey et al., 2015;Hossain et al., 2015;Kratzer et al., 2014;Markager et al., 2019), However, while there are some clear advantage of using satellites for obtaining high temporal and spatial resolution data, studies have also shed light towards strong needs to improve the accuracy and precision of the applied algorithms to obtain more reliable estimate of parameters such as chlorophyll (O'Reilly et al., 2000;Pitarch et al., 2016). ...
... A major factor adding to the complexity of the use of a robust chlorophyll algorithm, especially in the optically complex region such as the Baltic region, relates to the presence of high concentrations of CDOM caused by humic rich freshwater inflow (Kowalczuk et al., 2006;Mélin and Vantrepotte, 2015;Pitarch et al., 2016). For optically complex water bodies with high CDOM concentrations, whose properties change significantly throughout the seasons, it is challenging to obtain accurate values of chlorophyll concentrations from satellites (Sathyendranath, 2000), leading often to an overestimation of chlorophyll concentrations through the use of standard algorithm (Attila et al., 2013;Darecki and Stramski, 2004). ...
... The chlorophyll concentrations from satellite sensors were derived from merging of SeaWiFS, MODIS/AQUA-MERIS-VIIRS remote-sensing reflectance similar to Gohin et al. (2019), processed by the combination of Copernicus Marine Environment Monitoring Services (CMEMS) Baltic Sea-Specific algorithm (BalAlg) (Pitarch et al., 2016), and the Free University Berlin (FUB) neural network (v4.01, (Schroeder et al., 2007)) algorithm. BalAlg is an adaptation of the OC4v6 algorithm for the Baltic Sea, modified by applying the coefficients of the linear regression between in situ and OC4v6-derived chlorophyll data to reduce the biasness between satellite observations and in situ measurements. ...
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... Suppose that multiple sensors simultaneously record and monitor the cross-country skier's movement, so that R 1 and R n represent the data obtained by the first sensor and the nth sensor. If R 1 and R n both satisfy the characteristics of Gaussian distribution [24], to express the degree of difference between the two, the formula is expressed as ...
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... Bootstrapping methods (Efron, 1979) provide an adequate methodology to strengthen the uncertainty estimation in algorithm selection exercises, as such are often used in the OCR community for the selection of CHL algorithms Pitarch et al., 2016). Alas they are used seldom for radiometric comparisons as they are not recommended in the current protocols. ...
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... Bailey and Werdell (2006) proposed a 5 × 5 or 3 × 3 box for averaging satellite data with a pixel size of 1 km × 1 km. For satellite data with bigger pixel size (i.e. 4 km or 9 km), a single-pixel without spatial windowing in the Baltic Sea (a semi-enclosed marginal sea) (Pitarch et al., 2016) and coastal areas of the eastern China Sea (Hao et al., 2019), a 3 × 3 and 5 × 5 box along coasts of Southern Ocean (Johnson et al., 2013), and spatial averaging in Mediterranean Sea (Volpe et al., 2019) have been used. In this study, at the first step the spatial homogeneity of Chl-a in a 3 × 3 box centered on the location of an in situ sample was tested using the coefficient of variation (CV) and a two-tailed critical value of Student's t-test (Zar, 1996;Bailey and Werdell, 2006). ...
... In addition, to select the best match-up pairs, only in situ match-up data pairs were selected which had difference of <15% with the associated Chl-a pixel (Harding et al., 2005). Also, the matchup data pairs which were outside the range of 1/20 and 20 times of the in situ Chl-a averages, were considered as outliers and discarded (Pitarch et al., 2016). As a result, 32%, 33%, 41%, 29%, 20%, and 18% of available in situ samples were considered for evaluation of OC-CCI, MGCL, MODIS, MERIS, SeaWiFS, and VIIRS datasets, respectively (Table 1). ...
... The merged multi-sensor Chl-a datasets have been used in several studies to evaluate the Chl-a retrieval algorithms in marginal seas. Most of these studies have shown that the OC-CCI and GlobColour Chl-a datasets can be used properly for monitoring the chlorophyll concentrations in the coastal turbid waters (Johnson et al., 2013;Brotas et al., 2014;Sá et al., 2015;Johnson et al., 2013;Pitarch et al., 2016;Mélin et al., 2017;Hao et al., 2019;Volpe et al., 2019). ...
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A R T I C L E I N F O Keywords: Long-term water quality monitoring Remote sensing Integration Multi-sensor satellites In-situ measurements Hyperspectral observations MERIS MSI OLCI ENVISAT Sentinel-2 Sentinel-3 2SeaColor MODTRAN Radiative Transfer modeling Coastal waters The Wadden Sea A B S T R A C T Recently, there have been significant efforts in the integration of in-situ and satellite observations for effective monitoring of coastal areas (e.g., the Copernicus program of the European Space Agency). In this study, a 15-year diurnal variation of Water Constituent Concentrations (WCCs) was retrieved from multi-sensor satellite images and in-situ hyperspectral measurements using Radiative Transfer (RT) modeling in the Dutch Wadden Sea. The existing RT model 2SeaColor was inverted against time series of in-situ hyperspectral measurements of water leaving reflectances (R rs [sr −1 ]) for the simultaneous retrieval of WCCs (i.e., Chlorophyll-a (Chla), Suspended Particulate Matter (SPM), Dissolved Organic Matter (CDOM)) on a daily basis between 2003 and 2018 at the NIOZ jetty station (the NJS) located in the Dutch part of the Wadden Sea. At the same time, the existing coupled atmosphere-hydro-optical RT model MOD2SEA was used for the simultaneous retrieval of WCCs from time series of multi-sensor satellite images of the MEdium Resolution Imaging Spectrometer (MERIS) onboard ENVISAT, Multispectral Instrument (MSI) onboard Sentinel-2 and Ocean and Land Colour Instrument (OLCI) onboard Sentinel-3 between 2003 and 2018 over the Dutch Wadden Sea. At the NJS, a direct comparison (Taylor diagram and statistical analysis) showed strong agreement between in-situ and satellite-derived WCC values (Chla: R 2 ≥ 0.70, RMSE ≤7.5 [mg m −3 ]; SPM: R 2 ≥ 0.72, RMSE ≤5.5 [g m −3 ]; CDOM absorption at 440 nm: R 2 ≥ 0.67, RMSE ≤1.7 [m −1 ]). Next, the plausibility of the spatial variation of retrieved WCCs over the study area was evaluated by generating maps of Chla [mg m −3 ], SPM [g m −3 ], and CDOM absorption at 440 nm [m −1 ] from MERIS and OLCI images using the MOD2SEA model. The integration of the spatio-temporal WCC data obtained from in-situ measurements and satellite images in this study finds applications for the detection of anomaly events and serves as a warning for management actions in the complex coastal waters of the Wadden Sea.
... Shelf seas are more sensitive to terrestrial runoff and bottom resuspension, and upwelling coastal areas are known for the high phytoplankton biomass. Enclosed and semi-enclosed seas follow their own dynamics Kopelevich et al., 2004;Pitarch et al., 2016). ...
... SBAL displays seasonal dynamics influenced by an intense summer bloom (Pitarch et al., 2016) that leads to a green-brown color (FU = 8-9). The rest of the year, color is dominated by high amounts of CDOM. ...
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... These studies indicated that the inversion model developed at the Free University of Berlin, the "FUB model" (Schroeder et al., 2007a(Schroeder et al., , 2007b, estimated chl-a concentrations better than the other examined processors, such as MERIS ground segment processor (MEGS) and the Case-2 regional processor (C2R) (Doerffer and Schiller, 2007). The assessment of coastal water bodies is not feasible with the Baltic Sea chl-a products generated by the Copernicus Marine Environment Monitoring Service (CMEMS) (Pitarch et al., 2016;CMEMS Quality Information Document, 2016) due to its 1-4 km spatial resolution and its limited accuracy in comparison to in situ data over the Baltic Sea (r 2 = 0.2 and r 2 = 0.46 for 1 km product and reprocessed time series (4 km, REP), respectively, Pitarch et al., 2016). ...
... These studies indicated that the inversion model developed at the Free University of Berlin, the "FUB model" (Schroeder et al., 2007a(Schroeder et al., , 2007b, estimated chl-a concentrations better than the other examined processors, such as MERIS ground segment processor (MEGS) and the Case-2 regional processor (C2R) (Doerffer and Schiller, 2007). The assessment of coastal water bodies is not feasible with the Baltic Sea chl-a products generated by the Copernicus Marine Environment Monitoring Service (CMEMS) (Pitarch et al., 2016;CMEMS Quality Information Document, 2016) due to its 1-4 km spatial resolution and its limited accuracy in comparison to in situ data over the Baltic Sea (r 2 = 0.2 and r 2 = 0.46 for 1 km product and reprocessed time series (4 km, REP), respectively, Pitarch et al., 2016). ...
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Earth Observation (EO) offers spatially and temporally unique data for generating information required under various environmental regulations for assessing the status of surface waters. These requirements, which are laid down in, for example, European Union directives and the Clean Water Act in the United States, share two core elements with respect to status assessments: 1) the status assessment is done using discrete classes, typically for water bodies, sub-areas or critical sites representative for certain area of interest, and 2) phytoplankton chlorophyll a (chl-a) is one of the main variables considered. We analysed the benefits of using chl-a concentrations derived from EO data for the status assessments specified in the EU Water Framework Directive (WFD). Our study focused especially on EO observations' ability to capture extreme and transient events (such as instances of cyanobacteria blooms) more frequently than the monitoring-station data conventionally employs. The accuracy of EO-based chl-a assessment was studied for, in all, 129 Finnish water bodies in the area of the Baltic Sea, in Northern Europe. Natural conditions in this coastal area – particularly its multitude of small bays, numerous estuaries, and mosaic of islands – impose exceptionally strict requirements for an EO instrument's spatial resolution. The analysis revealed that an instrument with a 300 m resolution, such as the MEdium Resolution Imaging Spectrometer (MERIS) or Ocean and Land Colour Instrument (OLCI), can be used to estimate the water quality in 62% of these water bodies. Processing of MERIS data into chl-a concentrations by means of a FUB inversion model demonstrated good accuracy relative to monitoring stations' measurements for the open-water season in 2003–2011. This extensive dataset showed a 23% difference in modal values between EO- and station-sampling-based chl-a concentrations. The bias in EO chl-a estimates was found to increase with low Secchi disk depth, elevated turbidity, and the presence of intensive phytoplankton blooms. The monitoring-station and EO data showed similar distributions of chl-a observations for a given day and location, a finding that supports the comprehensive use of EO-derived chl-a concentrations in assessment. For determination of a water body's status, the EO data required but also allowed for statistical analysis that differs from what has typically been utilised with sparse measurements from monitoring-station data. The geometric mean or the mode of the EO observations was found to represent the main bulk of the chl-a concentrations well statistically. In contrast, the arithmetic mean of EO observations yields chl-a concentrations that are roughly 1.1–1.6 μg/l higher and hence can lead to over-estimation in the associated status assessment. This paper also presents a new approach applicable for evaluating the validity of EO-based algorithms for any coastal water area requiring assessment. With this quality-grade (QG) method, the EO chl-a estimation accuracy is rated in terms of three grades, with water bodies taken as the evaluation units. For this, the method utilises statistical differences between EO and station-sampling chl-a concentrations and applies background information on optical properties obtained from measurements at routine-monitoring stations. The QG method showed the EO-based chl-a accuracy to suffice for assessing the status of 65% of the coastal water bodies examined. At concentrations representing the threshold for the target of “good status” under the WFD, the EO approach produced 0.6 μg/l higher chl-a values than the stations' sampling did. The MERIS results point to clear benefits of using OLCI-based status assessment throughout the Sentinel-3 era.
... Previous research in the Baltic Sea evaluated the performance of standard and Case 2-specific Chl a (Harvey et al., 2015;D'Alimonte et al., 2012;Kratzer et al., 2008;Melin et al., 2007;Reinart and Kutser, 2006) and k d (Stramska and Swirgon, 2014;Doron et al., 2011;Pierson et al., 2008) ocean colour products. Regionally calibrated blue-green ratio versions of OC4v6 (Pitarch et al., 2016;Darecki and Stramski, 2004) have allegedly improved the accuracy of Chl a retrieval in the Baltic Sea, but do not work for waters where CDOM dominates the absorption in the blue. Using longer wavelengths such as red-to-green (Woźniak et al., 2014) and red-to-near-infra red (Koponen et al., 2007;Krawczyk et al., 1997;Matthews, 2011) is therefore advisable in these optically complex, CDOM-rich waters. ...
... R rs is low in the blue region due to the high absorption by CDOM, and the performance of R rs (490)/R rs (560) ratios were better compared to R rs (443)/R rs (560) ratios since the R rs (490) signal was stronger than R rs (443), which may be relevant for Chl a algorithms such as OC3 and OC4 when they use the R rs (490)/R rs (560) ratios. Pitarch et al. (2016), however used the regional calibration of OC4v6 to map the Chl a concentration in the Baltic Sea, but they found that OC4v6 over-estimates Chl a resulting in a R 2 = 0.43 and bias of 0.44, suggesting that Chl a algorithms for the Baltic Sea, should use longer wavelengths than R rs (490). In their analysis, they also included data from the Kattegat and Skagerrak which proved to be more accurate with blue: green Chl a algorithms than for the Baltic Sea area. ...
Article
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Remote sensing studies published up to now show that the performance of empirical (band-ratio type) algorithms in different parts of the Baltic Sea is highly variable. Best performing algorithms are different in the different regions of the Baltic Sea. Moreover, there is indication that the algorithms have to be seasonal as the optical properties of phytoplankton assemblages dominating in spring and summer are so different. We modelled 15,600 reflectance spectra using HydroLight radiative transfer model to test 58 previously published empirical algorithms. 7200 of the spectra were modelled using specific inherent optical properties (SIOPs) of the open parts of the Baltic Sea in summer and 8400 with SIOPs of spring season. Concentration range of chlorophyll-a, coloured dissolved organic matter (CDOM) and suspended matter used in the model simulations were based on the actually measured values available in literature. For each optically active constituent we added one concentration below actually measured minimum and one concentration above the actually measured maximum value in order to test the performance of the algorithms in wider range. 77 in situ reflectance spectra from rocky (Sweden) and sandy (Estonia, Latvia) coastal areas were used to evaluate the performance of the algorithms also in coastal waters. Seasonal differences in the algorithm performance were confirmed but we found also algorithms that can be used in both spring and summer conditions. The algorithms that use bands available on OLCI, launched in February 2016, are highlighted as this sensor will be available for Baltic Sea monitoring for coming decades.