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Alternaria brassicae , a necrotrophic pathogen, causes Alternaria Leaf Spot, one of the economically important diseases of Brassica crops. Many other Alternaria spp. such as A. brassicicola and A. alternata are known to cause secondary infections in the A. brassicae -infected Brassicas . The genome architecture, pathogenicity factors, and determina...
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Context 1
... content estimation and masking using RepeatModeler and RepeatMasker revealed that scaffold 13, 17, 18, and 19) was compared to the whole genome. The gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. ...Context 2
... gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). ...Context 3
... gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). ...Context 4
... the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). These species-specific genes included 35 secreted protein coding genes out of which 11 were predicted 245 to be effectors. ...Context 5
... content estimation and masking using RepeatModeler and RepeatMasker revealed that scaffold 13, 17, 18, and 19) was compared to the whole genome. The gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. ...Context 6
... gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). ...Context 7
... gene content of the lineage-specific contigs was significantly lower than that of the core chromosomes (Table 2). Conversely, the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). ...Context 8
... the DC contigs 229 were highly enriched in TE content as compared to the core chromosomes (Table 2) Table 2) 242 out of which 3,45,321 proteins could be assigned to an orthogroup. We identified 460 A. brassicae specific 243 genes which were present in A. brassicae but absent in all other Alternaria species (Supplementary Table 244 3). These species-specific genes included 35 secreted protein coding genes out of which 11 were predicted 245 to be effectors. ...Similar publications
Background:
Alternaria brassicae, a necrotrophic pathogen, causes Alternaria Leaf Spot, one of the economically important diseases of Brassica crops. Many other Alternaria spp. such as A. brassicicola and A. alternata are known to cause secondary infections in the A. brassicae-infected Brassicas. The genome architecture, pathogenicity factors, and...
Ascochyta blight caused by Ascochyta pisi is a major constraint to pea (Pisum sativum L.) production worldwide. Deciphering the pathogenic mechanism of A. pisi on peas will help in breeding resistant pea varieties and developing effective approaches for disease management. However, little is known about the genomic features and pathogenic factors o...
