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Clinical and radiographic features. A . Face of patient II-1. B . Face of patient II-3. C . Palate of patient II-1. D . Hands of patient II-3. E - J . Skeletal radiographs of Patient II-1 showing the left humerus (E) , left forearm (F) , left hand (G) , pelvis (H) , left femur (I) and left lower leg (J) . Note the gracile bones and undermineralization as well as the healing humeral fracture (E) . 

Clinical and radiographic features. A . Face of patient II-1. B . Face of patient II-3. C . Palate of patient II-1. D . Hands of patient II-3. E - J . Skeletal radiographs of Patient II-1 showing the left humerus (E) , left forearm (F) , left hand (G) , pelvis (H) , left femur (I) and left lower leg (J) . Note the gracile bones and undermineralization as well as the healing humeral fracture (E) . 

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Snyder-Robinson Syndrome (SRS) is an X-linked intellectual disability disorder also characterized by osteoporosis, scoliosis, and dysmorphic facial features. It is caused by mutations in SMS, a ubiquitously expressed gene encoding the polyamine biosynthetic enzyme spermine synthase. We hypothesized that the tissue specificity of SRS arises from dif...

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... acidosis (RTA), nephrocalcinosis and nephro- lithiasis. His renal stones were composed of carbonate apatite and calcium oxalate. His RTA has been managed with fluid and electrolyte replacement, spironolactone and hydrochlorothiazide. Although initially controlled with phenobarbital, his seizures progressed to infantile spasms by 15 months. Adrenocorticotropic hormone (ACTH) treatment transi- ently reduced seizure frequency. His current anticonvulsant therapy includes rufinamide, felbamate, clonazepam, and topiramate. He had delayed development with regression of several developmental milestones. He smiled and laughed by 4 months, reached for toys by 6 months, had vocalizations by 7 months, and could hold his head up and roll onto his side by 8 months. He achieved his pincer grasp at 18 months but lost it by 23 months. He never walked. He lost many motor skills and all vocalization by 26 months of age. A cranial MRI at 14 years revealed cys- tic encephalomalacia and a low parenchymal T2 signal in the right temporal and right occipital lobes. These findings were considered consequences of the perinatal intraventricular hemorrhage. When first evaluated at NIH at 15 years, Patient II-1 was awake but not interactive and could not sit inde- pendently or hold up his head; he withdrew from nox- ious stimuli. His height, weight and OFC were 129 cm (<3%ile), 30.8kg (<3%ile) and 50.3 cm (<3%ile), respectively. Facial dysmorphisms included a long, oval, asym- metric face, midface hypoplasia, down-slanting palpebral fissures, large, cupped ears, smooth philtrum, high- arched palate and prognathia (Figure 1). His dental en- amel was hypoplastic and secondary teeth 2, 6, 10, and 11 were absent. He had excessive drooling, sluggish pupillary reflexes and left-sided hearing loss. He had frequent seizures, severe hypotonia, decreased muscle bulk, hypoactive deep tendon reflexes, kyphoscoliosis and flexion contractures of most large and small joints (Figure 1). He had one prepubertal (1-2 mL) testis that was undescended but palpable in the inguinal canal and one undescended testis, Tanner stage III pubic hair and a prepubertal phallus. His skin was remarkable for excretions of carbonate apatite, reflecting calcium/phosphate dysregulation. His ophthalmologic exam revealed retinitis pigmentosa and cortical blindness. Previous skeletal problems included congenital bilateral hip dislocation and fractures of his distal fibula (2 years), right humerus (5 years) and spine (6 years). Kyphoscoliosis developed between 6 and 12 years of age. A dual-energy x-ray absorptiometry (DEXA) scan performed at age 15 years demonstrated a bone density of 0.341 gm/cm 2 BMD (height adjusted Z-Score: -2.9 [21]) for the anteroposterior Spine (L1-L4) and 0.342 gm/cm 2 bone mineral density (height adjusted Z-Score: -6.5 [21]) for the right forearm. Skeletal radiographs at 18 years revealed a 60° convex right scoliosis, gracile bones with reduced mineral density, and evidence of previous fractures (Figure 2E-J). Patient II-3, the brother of Patient II-1, was born at 37 weeks by cesarean section following an uncomplicated pregnancy. His birth weight was 2.81 kg (25%). During the immediate neonatal period his platelet count decreased from 90 to 45 k/ μ L, and he was admitted to the neonatal intensive care unit for treatment with dexamethasone and a platelet transfusion. He also had transient hypoglycemia, poor feeding and sensitivity to light. By 4 days of life, his condition had stabilized and he was discharged. Over the subsequent months, he manifested moderate laryngomalacia, mild tracheobro- chomalacia, severe torticollis and abnormally pigmen- ted retinas. Like his brother, he has also had episodic hyper- and hypoglycemia. He was diagnosed with nephrocalcinosis at 1 year and RTA by 2 years. The composition of his renal stones was carbonate apatite and calcium oxalate. Patient II-3 had global developmental delay, severe hypotonia, and regression of milestones; he lost vocalizations and most motor skills by 15 months. An EEG at 6 months showed generalized slowing and disorganization; at 18 months he manifested seizures and hypsarrhyth- mia. An MRI performed at 2 years of age showed a mild increase in ventricular size but no other abnormalities. There was no evidence of hemorrhage or malformation. Since age 5 years, he has required a vagal nerve stimula- tor and bi-pap for adequate respiration. He also had re- peated Pseudomonas aeruginosa pulmonary infections. His infections are more frequent and severe than are those of his brother. Patient II-3 has had multiple atraumatic fractures in- volving the clavicle, tibia, femur and humerus. He also had congenital bilateral hip dislocation and, by 4 years of age scoliosis. Illness prevented Patient II-3 from traveling to the NIH for evaluation, but review of his medical records and photographs showed that he was alert and non- ambulatory at age 10 years. He had facial features similar to those of his brother (Figure 1), superficial skin excretions, hypotonia, large joint contractures and muscle atrophy. The propositi had extensive laboratory testing. This identified an elevated antibody titer to myelin basic protein and a mild intermittent anemia with low iron satur- ation (7%; normal, 15-62) and ferritin (20 mcg/L; normal, 26 -388) for Patient II-1 and an elevated blood lactate level of 7.8 mmol/L (0.5-2.2) and mild elevations of urine carni- tine esters for Patient II-3. Testing for abnormalities in or- ganic acids, amino acids, acylcarnitines, very long chain fatty acids, lysosomal enzymes, biotinidase and copper were unremarkable. Molecular testing of MECP2 , mito- chondrial DNA, a panel of lysosomal storage disease- associated genes and the X-Linked Mental Retardation 9 Gene Panel (Greenwood Clinic, 2008), which did not include SMS and FRMPD4 , did not detect pathogenic mutations. Patient II-1 had a normal karyotype (46,XY), and clinical and research copy number variant analysis did not detect any pathogenic variants (Additional file 1: Table S1). The propositi were accepted into the NIH Undiagnosed Diseases Program (UDP) and enrolled in clinical protocol 76-HG-0238, approved by the Institutional Review Board of the National Human Genome Research Institute. Their parents gave written, informed consent. The NHGRI Genomics Core lab performed SNP determinations using the Illumina Bead Array Platform (HumanOm- niExpress, Illumina Corp., San Diego, CA, USA). Genome- wide fluorescent intensities and genotype calls were analyzed using Bead Studio and Genome Studio (Illumina Corp.). Analysis of copy-number variations was performed using PennCNV software, [22] and visual inspection using Genome Studio version 2010v3 build37/hg19 [23]. Genomic DNA was extracted from whole blood using the Gentra Puregene Blood kit (Qiagen, Valencia, CA) according to the manufacturer ’ s specifications. Exome sequencing and analysis were performed as described [24-26]. The potential pathogenicity of identified variants was predicted using CDPred, SIFT, PolyPhen2 [27-33] or the BLOSUM62 scoring matrix [34]. For the SMS variant, Qiagen HotStarTaq master mix (Qiagen, Valencia, CA) was used to amplify the putative variant and 200 flanking nucleotides using the primers 5 ′ - TGTGGCTTTCTTTTGCACAC-3 ′ and 5 ′ -TGCATCT CAAAAACCAGCAG-3 ′ . Unincorporated primers and nucleotides were removed using ExoSAP-IT reagent (USB, Cleveland, OH, USA). Sanger capillary sequencing was used to sequence the PCR products (Macrogen, Rockville, MD), and the sequences were aligned and analyzed using Sequencher v.4.10.1 (Gene Codes, Ann Arbor, MI, USA). Mutation interpretation was conducted using Alamut 2.0 (Interactive Biosoftware, San Diego, CA, USA). Patient II-1 was given two courses of demeclocycline prior to the biopsy so that dynamic histomorphometry, including measurement of bone turnover, could be performed [35]. A bicortical transiliac crest core biopsy was performed and immediately split. The sample was placed in 70% ethanol and sent to The Johns Hopkins School of Medicine for histomorphometry, which was performed as described [35]. Protein was extracted from fibroblast and osteoblast cell lines with RIPA buffer (Thermo Scientific, Waltham, MA) or used directly from Clontech human protein library (Clontech Laboratories, Mountain View, CA). Lysates (30ug) were electrophoresed on a 4-10% SDS-polyacrylamide gel and transferred to a polyvinylidene fluoride (PVDF) membrane. Using gentle agitation, the membrane was blocked overnight at 4oC with casein blocking buffer (Thermo Scientific, Waltham, MA) and 10% horse serum. Anti-SMS (1:1000) (Novus Biologicals, Littleton, CO), anti- β -tubulin (1:1000, AbCam, Cambridge, UK), and anti-GAPDH (1:1000, Gene Tex, Irvine, CA) were used as primary antibodies. Horsera- dish peroxidase-conjugated secondary antibodies (1:10000, Bio-rad Laboratories, Hurcules, CA) were used to detect the primary antibodies. The antibody-enzyme complexes were detected by chemiluminescence using Amersham ECL west- ern blotting detection reagent (GE Life Sciences, Pittsburgh, PA) or WesternSure Premium Chemiluminescent Substrate (LI-COR, Lincoln, NE) according to the manufacturer ’ s specifications. β -tubulin or GAPDH was detected as a loading control. Cellular fractionation was performed using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Scientific, Waltham, MA) per the manufacturer ’ s recommendations. Immunoblotting was performed as described above. β -tubulin and p84 (GeneTex, Irvine, CA) served as loading controls for the cytoplasmic and nuclear fractions, respectively. RNA was extracted from cells using the RNeasy Mini Kit (Qiagen, Valencia, CA) per the manufacturer ’ s specifications. RNA was converted to cDNA using the VILO cDNA synthesis kit (Life Technologies, Grand Island, NY) per the manufacturer ’ s protocol. 100ng of cDNA was amplified using Sso Advanced SYBR Green supermix (Bio-Rad Laboratories, Richmond, CA) ...
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... are ubiquitous, aliphatic, positively charged molecules that interact with anionic compounds such as DNA, RNA, and ATP [1,2]. Homeostasis of the polyamines putrescine, spermidine, and spermine is essential to cell growth and survival [3]. By addition of a propyla- mine moiety, spermidine synthase (SRM) converts putrescine into spermidine, and spermine synthase (SMS) converts spermidine into spermine [4]. The balance of spermine and spermidine is crucial for ion channel regulation, transcription and translation [5-9]. Mutations of SMS , the gene encoding spermine synthase, cause Snyder-Robinson syndrome (SRS), an X-linked disorder first reported in 1969 [10]. The clinical features of SRS include intellectual disability, dysmorphic facies, speech and gait abnormalities, seizures, muscle hypoplasia, kyphoscoliosis, and osteoporosis [11-17]. All affected males have hemizygous mutations in SMS that result in reduced SMS activity and a decreased spermine:spermidine ratio. Atraumatic osteoporotic fractures commonly occur in individuals with SRS, leading to significantly impaired quality of life. Osteoporosis arises from disruption of the equilibrium between osteoclastic bone resorption and osteoblastic bone formation [18], which is regulated by mechanical and endocrine stimuli [19]. This general un- derstanding of osteoporosis has led to established therapeutic interventions, but further insights are required to address the osteoporosis of SRS in a disease-specific manner. Here we define the osteoporotic disease of SRS in two brothers with a missense mutation in SMS [20] and report depletion of osteoblasts and osteoclasts, reduced cancel- lous and cortical bone, reduced calcium-phosphate mineralization in vitro , and markedly abnormal polyamine content in human bone marrow stromal cells (hBMSCs). These data offer new insights into the role of polyamines in bone formation. The propositus (II-1, Figure 1) is the 18-year-old son of non-consanguineous healthy parents with no family history of intellectual disability or skeletal problems. He was born by cesarean section at 40 weeks following a gestation complicated by poor maternal weight gain and, at 8 months, atypical fetal movements suggestive of in utero seizures. His birth weight, length and occipitofrontal circumference (OFC) were 2.38 kg (3%), 47 cm (13%) and 34.5 cm (26%), respectively. Apgar scores were 8 and 9 at one and five minutes. He had saggy skin but no other dysmorphic features. Following a perinatal intraventricular hemorrhage associated with thrombocytopenia (7×10 3 cells/ μ l) that corrected after 3 platelet transfusions, he developed seizures, apnea with cyanosis, temperature instability and hypoglycemia. His recurrent episodes of hyperglycemia and hypoglycemia resolved with age and the placement of a gastric tube that allowed more frequent feedings. Patient II-1 had tracheomalacia, upper airway obstruc- tion, increased respiratory secretions, frequent aspira- tions, and pulmonary infections from infancy. By age 7 years, he had chronic Pseudomonas aeruginosa respiratory infection. At 6 years, he developed proximal renal tubular acidosis (RTA), nephrocalcinosis and nephro- lithiasis. His renal stones were composed of carbonate apatite and calcium oxalate. His RTA has been managed with fluid and electrolyte replacement, spironolactone and hydrochlorothiazide. Although initially controlled with phenobarbital, his seizures progressed to infantile spasms by 15 months. Adrenocorticotropic hormone (ACTH) treatment transi- ently reduced seizure frequency. His current anticonvulsant therapy includes rufinamide, felbamate, clonazepam, and topiramate. He had delayed development with regression of several developmental milestones. He smiled and laughed by 4 months, reached for toys by 6 months, had vocalizations by 7 months, and could hold his head up and roll onto his side by 8 months. He achieved his pincer grasp at 18 months but lost it by 23 months. He never walked. He lost many motor skills and all vocalization by 26 months of age. A cranial MRI at 14 years revealed cys- tic encephalomalacia and a low parenchymal T2 signal in the right temporal and right occipital lobes. These findings were considered consequences of the perinatal intraventricular hemorrhage. When first evaluated at NIH at 15 years, Patient II-1 was awake but not interactive and could not sit inde- pendently or hold up his head; he withdrew from nox- ious stimuli. His height, weight and OFC were 129 cm (<3%ile), 30.8kg (<3%ile) and 50.3 cm (<3%ile), respectively. Facial dysmorphisms included a long, oval, asym- metric face, midface hypoplasia, down-slanting palpebral fissures, large, cupped ears, smooth philtrum, high- arched palate and prognathia (Figure 1). His dental en- amel was hypoplastic and secondary teeth 2, 6, 10, and 11 were absent. He had excessive drooling, sluggish pupillary reflexes and left-sided hearing loss. He had frequent seizures, severe hypotonia, decreased muscle bulk, hypoactive deep tendon reflexes, kyphoscoliosis and flexion contractures of most large and small joints (Figure 1). He had one prepubertal (1-2 mL) testis that was undescended but palpable in the inguinal canal and one undescended testis, Tanner stage III pubic hair and a prepubertal phallus. His skin was remarkable for excretions of carbonate apatite, reflecting calcium/phosphate dysregulation. His ophthalmologic exam revealed retinitis pigmentosa and cortical blindness. Previous skeletal problems included congenital bilateral hip dislocation and fractures of his distal fibula (2 years), right humerus (5 years) and spine (6 years). Kyphoscoliosis developed between 6 and 12 years of age. A dual-energy x-ray absorptiometry (DEXA) scan performed at age 15 years demonstrated a bone density of 0.341 gm/cm 2 BMD (height adjusted Z-Score: -2.9 [21]) for the anteroposterior Spine (L1-L4) and 0.342 gm/cm 2 bone mineral density (height adjusted Z-Score: -6.5 [21]) for the right forearm. Skeletal radiographs at 18 years revealed a 60° convex right scoliosis, gracile bones with reduced mineral density, and evidence of previous fractures (Figure 2E-J). Patient II-3, the brother of Patient II-1, was born at 37 weeks by cesarean section following an uncomplicated pregnancy. His birth weight was 2.81 kg (25%). During the immediate neonatal period his platelet count decreased from 90 to 45 k/ μ L, and he was admitted to the neonatal intensive care unit for treatment with dexamethasone and a platelet transfusion. He also had transient hypoglycemia, poor feeding and sensitivity to light. By 4 days of life, his condition had stabilized and he was discharged. Over the subsequent months, he manifested moderate laryngomalacia, mild tracheobro- chomalacia, severe torticollis and abnormally pigmen- ted retinas. Like his brother, he has also had episodic hyper- and hypoglycemia. He was diagnosed with nephrocalcinosis at 1 year and RTA by 2 years. The composition of his renal stones was carbonate apatite and calcium oxalate. Patient II-3 had global developmental delay, severe hypotonia, and regression of milestones; he lost vocalizations and most motor skills by 15 months. An EEG at 6 months showed generalized slowing and disorganization; at 18 months he manifested seizures and hypsarrhyth- mia. An MRI performed at 2 years of age showed a mild increase in ventricular size but no other abnormalities. There was no evidence of hemorrhage or malformation. Since age 5 years, he has required a vagal nerve stimula- tor and bi-pap for adequate respiration. He also had re- peated Pseudomonas aeruginosa pulmonary infections. His infections are more frequent and severe than are those of his brother. Patient II-3 has had multiple atraumatic fractures in- volving the clavicle, tibia, femur and humerus. He also had congenital bilateral hip dislocation and, by 4 years of age scoliosis. Illness prevented Patient II-3 from traveling to the NIH for evaluation, but review of his medical records and photographs showed that he was alert and non- ambulatory at age 10 years. He had facial features similar to those of his brother (Figure 1), superficial skin excretions, hypotonia, large joint contractures and muscle atrophy. The propositi had extensive laboratory testing. This identified an elevated antibody titer to myelin basic protein and a mild intermittent anemia with low iron satur- ation (7%; normal, 15-62) and ferritin (20 mcg/L; normal, 26 -388) for Patient II-1 and an elevated blood lactate level of 7.8 mmol/L (0.5-2.2) and mild elevations of urine carni- tine esters for Patient II-3. Testing for abnormalities in or- ganic acids, amino acids, acylcarnitines, very long chain fatty acids, lysosomal enzymes, biotinidase and copper were unremarkable. Molecular testing of MECP2 , mito- chondrial DNA, a panel of lysosomal storage disease- associated genes and the X-Linked Mental Retardation 9 Gene Panel (Greenwood Clinic, 2008), which did not include SMS and FRMPD4 , did not detect pathogenic mutations. Patient II-1 had a normal karyotype (46,XY), and clinical and research copy number variant analysis did not detect any pathogenic variants (Additional file 1: Table S1). The propositi were accepted into the NIH Undiagnosed Diseases Program (UDP) and enrolled in clinical protocol 76-HG-0238, approved by the Institutional Review Board of the National Human Genome Research Institute. Their parents gave written, informed consent. The NHGRI Genomics Core lab performed SNP determinations using the Illumina Bead Array Platform (HumanOm- niExpress, Illumina Corp., San Diego, CA, USA). Genome- wide fluorescent intensities and genotype calls were analyzed using Bead Studio and Genome Studio (Illumina Corp.). ...
Context 3
... and ATP [1,2]. Homeostasis of the polyamines putrescine, spermidine, and spermine is essential to cell growth and survival [3]. By addition of a propyla- mine moiety, spermidine synthase (SRM) converts putrescine into spermidine, and spermine synthase (SMS) converts spermidine into spermine [4]. The balance of spermine and spermidine is crucial for ion channel regulation, transcription and translation [5-9]. Mutations of SMS , the gene encoding spermine synthase, cause Snyder-Robinson syndrome (SRS), an X-linked disorder first reported in 1969 [10]. The clinical features of SRS include intellectual disability, dysmorphic facies, speech and gait abnormalities, seizures, muscle hypoplasia, kyphoscoliosis, and osteoporosis [11-17]. All affected males have hemizygous mutations in SMS that result in reduced SMS activity and a decreased spermine:spermidine ratio. Atraumatic osteoporotic fractures commonly occur in individuals with SRS, leading to significantly impaired quality of life. Osteoporosis arises from disruption of the equilibrium between osteoclastic bone resorption and osteoblastic bone formation [18], which is regulated by mechanical and endocrine stimuli [19]. This general un- derstanding of osteoporosis has led to established therapeutic interventions, but further insights are required to address the osteoporosis of SRS in a disease-specific manner. Here we define the osteoporotic disease of SRS in two brothers with a missense mutation in SMS [20] and report depletion of osteoblasts and osteoclasts, reduced cancel- lous and cortical bone, reduced calcium-phosphate mineralization in vitro , and markedly abnormal polyamine content in human bone marrow stromal cells (hBMSCs). These data offer new insights into the role of polyamines in bone formation. The propositus (II-1, Figure 1) is the 18-year-old son of non-consanguineous healthy parents with no family history of intellectual disability or skeletal problems. He was born by cesarean section at 40 weeks following a gestation complicated by poor maternal weight gain and, at 8 months, atypical fetal movements suggestive of in utero seizures. His birth weight, length and occipitofrontal circumference (OFC) were 2.38 kg (3%), 47 cm (13%) and 34.5 cm (26%), respectively. Apgar scores were 8 and 9 at one and five minutes. He had saggy skin but no other dysmorphic features. Following a perinatal intraventricular hemorrhage associated with thrombocytopenia (7×10 3 cells/ μ l) that corrected after 3 platelet transfusions, he developed seizures, apnea with cyanosis, temperature instability and hypoglycemia. His recurrent episodes of hyperglycemia and hypoglycemia resolved with age and the placement of a gastric tube that allowed more frequent feedings. Patient II-1 had tracheomalacia, upper airway obstruc- tion, increased respiratory secretions, frequent aspira- tions, and pulmonary infections from infancy. By age 7 years, he had chronic Pseudomonas aeruginosa respiratory infection. At 6 years, he developed proximal renal tubular acidosis (RTA), nephrocalcinosis and nephro- lithiasis. His renal stones were composed of carbonate apatite and calcium oxalate. His RTA has been managed with fluid and electrolyte replacement, spironolactone and hydrochlorothiazide. Although initially controlled with phenobarbital, his seizures progressed to infantile spasms by 15 months. Adrenocorticotropic hormone (ACTH) treatment transi- ently reduced seizure frequency. His current anticonvulsant therapy includes rufinamide, felbamate, clonazepam, and topiramate. He had delayed development with regression of several developmental milestones. He smiled and laughed by 4 months, reached for toys by 6 months, had vocalizations by 7 months, and could hold his head up and roll onto his side by 8 months. He achieved his pincer grasp at 18 months but lost it by 23 months. He never walked. He lost many motor skills and all vocalization by 26 months of age. A cranial MRI at 14 years revealed cys- tic encephalomalacia and a low parenchymal T2 signal in the right temporal and right occipital lobes. These findings were considered consequences of the perinatal intraventricular hemorrhage. When first evaluated at NIH at 15 years, Patient II-1 was awake but not interactive and could not sit inde- pendently or hold up his head; he withdrew from nox- ious stimuli. His height, weight and OFC were 129 cm (<3%ile), 30.8kg (<3%ile) and 50.3 cm (<3%ile), respectively. Facial dysmorphisms included a long, oval, asym- metric face, midface hypoplasia, down-slanting palpebral fissures, large, cupped ears, smooth philtrum, high- arched palate and prognathia (Figure 1). His dental en- amel was hypoplastic and secondary teeth 2, 6, 10, and 11 were absent. He had excessive drooling, sluggish pupillary reflexes and left-sided hearing loss. He had frequent seizures, severe hypotonia, decreased muscle bulk, hypoactive deep tendon reflexes, kyphoscoliosis and flexion contractures of most large and small joints (Figure 1). He had one prepubertal (1-2 mL) testis that was undescended but palpable in the inguinal canal and one undescended testis, Tanner stage III pubic hair and a prepubertal phallus. His skin was remarkable for excretions of carbonate apatite, reflecting calcium/phosphate dysregulation. His ophthalmologic exam revealed retinitis pigmentosa and cortical blindness. Previous skeletal problems included congenital bilateral hip dislocation and fractures of his distal fibula (2 years), right humerus (5 years) and spine (6 years). Kyphoscoliosis developed between 6 and 12 years of age. A dual-energy x-ray absorptiometry (DEXA) scan performed at age 15 years demonstrated a bone density of 0.341 gm/cm 2 BMD (height adjusted Z-Score: -2.9 [21]) for the anteroposterior Spine (L1-L4) and 0.342 gm/cm 2 bone mineral density (height adjusted Z-Score: -6.5 [21]) for the right forearm. Skeletal radiographs at 18 years revealed a 60° convex right scoliosis, gracile bones with reduced mineral density, and evidence of previous fractures (Figure 2E-J). Patient II-3, the brother of Patient II-1, was born at 37 weeks by cesarean section following an uncomplicated pregnancy. His birth weight was 2.81 kg (25%). During the immediate neonatal period his platelet count decreased from 90 to 45 k/ μ L, and he was admitted to the neonatal intensive care unit for treatment with dexamethasone and a platelet transfusion. He also had transient hypoglycemia, poor feeding and sensitivity to light. By 4 days of life, his condition had stabilized and he was discharged. Over the subsequent months, he manifested moderate laryngomalacia, mild tracheobro- chomalacia, severe torticollis and abnormally pigmen- ted retinas. Like his brother, he has also had episodic hyper- and hypoglycemia. He was diagnosed with nephrocalcinosis at 1 year and RTA by 2 years. The composition of his renal stones was carbonate apatite and calcium oxalate. Patient II-3 had global developmental delay, severe hypotonia, and regression of milestones; he lost vocalizations and most motor skills by 15 months. An EEG at 6 months showed generalized slowing and disorganization; at 18 months he manifested seizures and hypsarrhyth- mia. An MRI performed at 2 years of age showed a mild increase in ventricular size but no other abnormalities. There was no evidence of hemorrhage or malformation. Since age 5 years, he has required a vagal nerve stimula- tor and bi-pap for adequate respiration. He also had re- peated Pseudomonas aeruginosa pulmonary infections. His infections are more frequent and severe than are those of his brother. Patient II-3 has had multiple atraumatic fractures in- volving the clavicle, tibia, femur and humerus. He also had congenital bilateral hip dislocation and, by 4 years of age scoliosis. Illness prevented Patient II-3 from traveling to the NIH for evaluation, but review of his medical records and photographs showed that he was alert and non- ambulatory at age 10 years. He had facial features similar to those of his brother (Figure 1), superficial skin excretions, hypotonia, large joint contractures and muscle atrophy. The propositi had extensive laboratory testing. This identified an elevated antibody titer to myelin basic protein and a mild intermittent anemia with low iron satur- ation (7%; normal, 15-62) and ferritin (20 mcg/L; normal, 26 -388) for Patient II-1 and an elevated blood lactate level of 7.8 mmol/L (0.5-2.2) and mild elevations of urine carni- tine esters for Patient II-3. Testing for abnormalities in or- ganic acids, amino acids, acylcarnitines, very long chain fatty acids, lysosomal enzymes, biotinidase and copper were unremarkable. Molecular testing of MECP2 , mito- chondrial DNA, a panel of lysosomal storage disease- associated genes and the X-Linked Mental Retardation 9 Gene Panel (Greenwood Clinic, 2008), which did not include SMS and FRMPD4 , did not detect pathogenic mutations. Patient II-1 had a normal karyotype (46,XY), and clinical and research copy number variant analysis did not detect any pathogenic variants (Additional file 1: Table S1). The propositi were accepted into the NIH Undiagnosed Diseases Program (UDP) and enrolled in clinical protocol 76-HG-0238, approved by the Institutional Review Board of the National Human Genome Research Institute. Their parents gave written, informed consent. The NHGRI Genomics Core lab performed SNP determinations using the Illumina Bead Array Platform (HumanOm- niExpress, Illumina Corp., San Diego, CA, USA). Genome- wide fluorescent intensities and genotype calls were analyzed using Bead Studio and Genome Studio (Illumina Corp.). Analysis of copy-number variations was performed using PennCNV software, [22] and visual inspection using Genome Studio version 2010v3 build37/hg19 [23]. Genomic DNA was extracted from whole blood using the Gentra Puregene Blood kit (Qiagen, Valencia, CA) according to the manufacturer ’ s specifications. Exome sequencing and analysis were performed as ...
Context 4
... are ubiquitous, aliphatic, positively charged molecules that interact with anionic compounds such as DNA, RNA, and ATP [1,2]. Homeostasis of the polyamines putrescine, spermidine, and spermine is essential to cell growth and survival [3]. By addition of a propyla- mine moiety, spermidine synthase (SRM) converts putrescine into spermidine, and spermine synthase (SMS) converts spermidine into spermine [4]. The balance of spermine and spermidine is crucial for ion channel regulation, transcription and translation [5-9]. Mutations of SMS , the gene encoding spermine synthase, cause Snyder-Robinson syndrome (SRS), an X-linked disorder first reported in 1969 [10]. The clinical features of SRS include intellectual disability, dysmorphic facies, speech and gait abnormalities, seizures, muscle hypoplasia, kyphoscoliosis, and osteoporosis [11-17]. All affected males have hemizygous mutations in SMS that result in reduced SMS activity and a decreased spermine:spermidine ratio. Atraumatic osteoporotic fractures commonly occur in individuals with SRS, leading to significantly impaired quality of life. Osteoporosis arises from disruption of the equilibrium between osteoclastic bone resorption and osteoblastic bone formation [18], which is regulated by mechanical and endocrine stimuli [19]. This general un- derstanding of osteoporosis has led to established therapeutic interventions, but further insights are required to address the osteoporosis of SRS in a disease-specific manner. Here we define the osteoporotic disease of SRS in two brothers with a missense mutation in SMS [20] and report depletion of osteoblasts and osteoclasts, reduced cancel- lous and cortical bone, reduced calcium-phosphate mineralization in vitro , and markedly abnormal polyamine content in human bone marrow stromal cells (hBMSCs). These data offer new insights into the role of polyamines in bone formation. The propositus (II-1, Figure 1) is the 18-year-old son of non-consanguineous healthy parents with no family history of intellectual disability or skeletal problems. He was born by cesarean section at 40 weeks following a gestation complicated by poor maternal weight gain and, at 8 months, atypical fetal movements suggestive of in utero seizures. His birth weight, length and occipitofrontal circumference (OFC) were 2.38 kg (3%), 47 cm (13%) and 34.5 cm (26%), respectively. Apgar scores were 8 and 9 at one and five minutes. He had saggy skin but no other dysmorphic features. Following a perinatal intraventricular hemorrhage associated with thrombocytopenia (7×10 3 cells/ μ l) that corrected after 3 platelet transfusions, he developed seizures, apnea with cyanosis, temperature instability and hypoglycemia. His recurrent episodes of hyperglycemia and hypoglycemia resolved with age and the placement of a gastric tube that allowed more frequent feedings. Patient II-1 had tracheomalacia, upper airway obstruc- tion, increased respiratory secretions, frequent aspira- tions, and pulmonary infections from infancy. By age 7 years, he had chronic Pseudomonas aeruginosa respiratory infection. At 6 years, he developed proximal renal tubular acidosis (RTA), nephrocalcinosis and nephro- lithiasis. His renal stones were composed of carbonate apatite and calcium oxalate. His RTA has been managed with fluid and electrolyte replacement, spironolactone and hydrochlorothiazide. Although initially controlled with phenobarbital, his seizures progressed to infantile spasms by 15 months. Adrenocorticotropic hormone (ACTH) treatment transi- ently reduced seizure frequency. His current anticonvulsant therapy includes rufinamide, felbamate, clonazepam, and topiramate. He had delayed development with regression of several developmental milestones. He smiled and laughed by 4 months, reached for toys by 6 months, had vocalizations by 7 months, and could hold his head up and roll onto his side by 8 months. He achieved his pincer grasp at 18 months but lost it by 23 months. He never walked. He lost many motor skills and all vocalization by 26 months of age. A cranial MRI at 14 years revealed cys- tic encephalomalacia and a low parenchymal T2 signal in the right temporal and right occipital lobes. These findings were considered consequences of the perinatal intraventricular hemorrhage. When first evaluated at NIH at 15 years, Patient II-1 was awake but not interactive and could not sit inde- pendently or hold up his head; he withdrew from nox- ious stimuli. His height, weight and OFC were 129 cm (<3%ile), 30.8kg (<3%ile) and 50.3 cm (<3%ile), respectively. Facial dysmorphisms included a long, oval, asym- metric face, midface hypoplasia, down-slanting palpebral fissures, large, cupped ears, smooth philtrum, high- arched palate and prognathia (Figure 1). His dental en- amel was hypoplastic and secondary teeth 2, 6, 10, and 11 were absent. He had excessive drooling, sluggish pupillary reflexes and left-sided hearing loss. He had frequent seizures, severe hypotonia, decreased muscle bulk, hypoactive deep tendon reflexes, kyphoscoliosis and flexion contractures of most large and small joints (Figure 1). He had one prepubertal (1-2 mL) testis that was undescended but palpable in the inguinal canal and one undescended testis, Tanner stage III pubic hair and a prepubertal phallus. His skin was remarkable for excretions of carbonate apatite, reflecting calcium/phosphate dysregulation. His ophthalmologic exam revealed retinitis pigmentosa and cortical blindness. Previous skeletal problems included congenital bilateral hip dislocation and fractures of his distal fibula (2 years), right humerus (5 years) and spine (6 years). Kyphoscoliosis developed between 6 and 12 years of age. A dual-energy x-ray absorptiometry (DEXA) scan performed at age 15 years demonstrated a bone density of 0.341 gm/cm 2 BMD (height adjusted Z-Score: -2.9 [21]) for the anteroposterior Spine (L1-L4) and 0.342 gm/cm 2 bone mineral density (height adjusted Z-Score: -6.5 [21]) for the right forearm. Skeletal radiographs at 18 years revealed a 60° convex right scoliosis, gracile bones with reduced mineral density, and evidence of previous fractures (Figure 2E-J). Patient II-3, the brother of Patient II-1, was born at 37 weeks by cesarean section following an uncomplicated pregnancy. His birth weight was 2.81 kg (25%). During the immediate neonatal period his platelet count decreased from 90 to 45 k/ μ L, and he was admitted to the neonatal intensive care unit for treatment with dexamethasone and a platelet transfusion. He also had transient hypoglycemia, poor feeding and sensitivity to light. By 4 days of life, his condition had stabilized and he was discharged. Over the subsequent months, he manifested moderate laryngomalacia, mild tracheobro- chomalacia, severe torticollis and abnormally pigmen- ted retinas. Like his brother, he has also had episodic hyper- and hypoglycemia. He was diagnosed with ...
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... propositus (II-1, Figure 1) is the 18-year-old son of non-consanguineous healthy parents with no family his- tory of intellectual disability or skeletal problems. ...
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... height, weight and OFC were 129 cm (<3%ile), 30.8kg (<3%ile) and 50.3 cm (<3%ile), respect- ively. Facial dysmorphisms included a long, oval, asym- metric face, midface hypoplasia, down-slanting palpebral fissures, large, cupped ears, smooth philtrum, high- arched palate and prognathia (Figure 1). His dental en- amel was hypoplastic and secondary teeth 2, 6, 10, and 11 were absent. ...
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... had excessive drooling, sluggish pupillary reflexes and left-sided hearing loss. He had fre- quent seizures, severe hypotonia, decreased muscle bulk, hypoactive deep tendon reflexes, kyphoscoliosis and flexion contractures of most large and small joints (Figure 1). He had one prepubertal (1-2 mL) testis that was undescended but palpable in the inguinal canal and one undescended testis, Tanner stage III pubic hair and a prepubertal phallus. ...
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... prevented Patient II-3 from traveling to the NIH for evaluation, but review of his medical records and photographs showed that he was alert and non- ambulatory at age 10 years. He had facial features similar to those of his brother (Figure 1), superficial skin excre- tions, hypotonia, large joint contractures and muscle atrophy. ...
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... formation is decreased in patient II-1 SMS is widely expressed (Additional file 1: Figure S1); consequently, we questioned why specific tissues such as bone are particularly affected in SRS patients. To define better the osteoporosis of SRS, we performed a bicortical transiliac crest core biopsy of Patient II-1. ...
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... variants meeting rarity and predicted deleteriousness requirements and segregating with disease. Figure S1. Expression profile of SMS mRNA and protein. ...

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... p.Q148R and p.I150T are located in the central domain. p.Q148R [34] alters the 5′-methylthioadenosine (MTA)binding site, whereas p.I150T [35] induces structural changes in the vicinity of the MTA-binding site and reduces the stability of the C-terminal domain. p.L277F, p.M303Kfs*3, and p.Y328C are located in the C-terminal domain. ...
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... As spermine synthase catalyzes the synthesis of spermine from spermidine, the deficiency of this enzyme causes excessive spermidine accumulation with a lack of spermine. In bone biopsies and primary cultures from patients with SMS mutation, bone histopathology and morphometry showed a profound depletion of osteoblasts with a low bone volume and the absence of a trabecular meshwork (35). In addition, in bone marrow stromal cells of SRS patients, osteogenic differentiation was impaired, with decreased calcium phosphate mineralization (35). ...
... In bone biopsies and primary cultures from patients with SMS mutation, bone histopathology and morphometry showed a profound depletion of osteoblasts with a low bone volume and the absence of a trabecular meshwork (35). In addition, in bone marrow stromal cells of SRS patients, osteogenic differentiation was impaired, with decreased calcium phosphate mineralization (35). This suggests that spermidine excess with spermine depletion may contribute to low bone density. ...
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Context Metabolomics is an emerging tool that provides insights into the dynamics of phenotypic changes. It is a potential method for the discovery of novel serum markers of fracture. Objective To identify metabolite parameters that can be used as a proxy for osteoporotic fracture risk Design Prospective study based on the Ansung cohort in Korea. Setting The general community. Participants 1,504 participants with metabolomic analyses. Interventions None. Main Outcome Measure Fragility fractures. Results We measured 135 baseline metabolite profiles in fasting serum of the participants. The participants had a mean age of 60.2 years and comprised of 585 (38.9%) men. During a mean 9-year follow-up, 112 osteoporotic fracture events occurred. Of all metabolites measured, only serum spermidine concentrations were positively associated with the risk of fracture (hazard ratio [HR] per 1 μM of spermidine 1.35, 95% confidence interval [CI]= 1.03-1.65, p=0.020) after adjustments for age, sex, BMI, diabetes, hypertension, smoking status, previous fracture history, and baseline tibial quantitative ultrasound. Participants with spermidine concentrations >1.57 μM had a 2.2-fold higher risk of fractures (95% CI 1.08-4.51, p=0.030) compared to those with concentrations ≤1.57 μM after adjustment. In a subgroup analysis, women with baseline spermidine concentrations >1.57 μM also had a 2.4-fold higher risk of fracture than those with concentrations ≤1.57 μM (95% CI 1.02-5.48, p=0.047). Conclusions Increased baseline spermidine concentrations were associated with a risk of osteoporotic fracture during a mean 9-year follow-up. The biological significance of the metabolites in the musculoskeletal system could be a subject for future studies.