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Chromosomal location, size, and mutation frequency of LCA genes

Chromosomal location, size, and mutation frequency of LCA genes

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Leber congenital amaurosis (LCA) is the most common inherited cause of blindness in childhood and is characterised by a severe retinal dystrophy before the age of one year. Six genes have been identified that together account for approximately half of all LCA patients. These genes are expressed preferentially in the retina or the retinal pigment ep...

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... in the six currently identified LCA genes are esti- mated to underlie approximately 50% of LCA cases (Table 1), although a comprehensive mutation analysis of all six genes in the same patient group has not been performed. The six LCA genes show a high degree of allelic heterogeneity with only a few mutations found recurrently (Fig. 2). ...
Context 2
... six genes that have been identified account for approximately half of all LCA cases. Single-strand conforma- tion analysis (SSCA) of these genes requires analysis of nearly 100 amplicons (Table 1). Routine mutation analysis of LCA patient samples using SSCA in standard DNA diagnostic facilities is therefore neither efficient nor cost-effective. ...

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Citations

... It may manifest as a stand-alone ocular ailment or as a component of a syndrome, like Senior Loken or Joubert syndrome. Although autosomal dominant inheritance has been reported within some families, autosomal recessive inheritance is the usual mode of inheritance for LCA (61). Clinical Presentation People with LCA disease often have severe visual impairments from birth or early childhood. ...
... Approximately 10% of LCA patients have CRB1 variants. CEP290-LCA is a prevalent genetic cause, accounting for 15%-20% of cases (61). Patients with GUCY2D mutations typically have a stable vision, while those with RPE65 mutations may show some improvement followed by a decline. ...
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Thesis
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Cytosine base editors and adenine base editors (ABEs) can correct point mutations predictably and independent of Cas9-induced double-stranded DNA breaks (which causes substantial indel formation) and homology-directed repair (which typically leads to low editing efficiency). Here, we show, in adult mice, that a subretinal injection of an adeno-associated virus expressing an ABE and a single-guide RNA targeting a de novo nonsense mutation in the Rpe65 gene corrects the pathogenic mutation with up to 29% efficiency and with minimal formation of indel and off-target mutations, despite the absence of the canonical NGG sequence as a protospacer-adjacent motif. The ABE-treated mice displayed restored RPE65 expression and retinoid isomerase activity, and near-normal levels of retinal and visual functions. Our findings motivate the further testing of ABEs for the treatment of inherited retinal diseases and for the correction of pathological mutations with non-canonical protospacer-adjacent motifs.
... 9,30,45,48 On the other hand, some studies figured out that the other modifier genes and environmental factors may contribute to the phenotypic severity of the CRB1-associated retinopathy. 30,32,61 In the present study, patients with biallelic truncation variants presented an advanced NPD fundus change at a younger age (mostly less than five years of age) as compared to those with biallelic missense variants (Fig 3). Truncation variants played an essential role in patients' clinical performance, and the pathogenicity of the variants could influence the phenotype to some extent. ...
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Purpose To reveal the characteristics of ocular changes in patients with biallelic CRB1 mutations. Design Comparative exome sequencing and retrospective case series on clinical data. Methods Seventy-four patients from 63 families with biallelic potential pathogenic variants in CRB1 were selected from our in-house exome sequencing. The clinical data were reviewed and evaluated in detail, including best corrected visual acuity, fundus photography, OCT, and ERG. Results Biallelic CRB1 variants, involving 45 variants including 23 novel, were identified in 40 novel families based on exome sequencing. Analysing clinical data of the 74 individuals from 63 families revealed the following CRB1-associated phenotypes: 1) early-onset reduced visual acuity with congenital nystagmus; 2) two types of characteristic retinal changes including yellowish geographic macular degeneration (YMD) or nummular pigment deposits (NPD) at posterior retina with bone-spicule pigmentation at mid-peripheral; 3) undetectable rod and cone responses on electroretinogram; 4) cystoid macular edema or macular atrophy on OCT. YMD and NPD are unique and CRB1-associated. Long-term follow-up examination as well as age- and variant-dependent phenotypic analysis suggested YMD is the early fundus change that would gradually progress to NPD. Conclusions YMD and NPD are two major characteristic CRB1-associated fundus changes and the former one will advance to the latter with age. Recognizing such characteristic signs associated with biallelic CRB1 variants may be of value in areas without widespread access to genetic testing where a more targeted approach is needed and might be biomarkers for evaluation of effects for future intervention.
... Leber congenital amaurosis (LCA) is the earliest and most severe form of all inherited retinal degeneration (IRD), characterized by blindness or severe visual impairment from birth [1,2]. It is clinically diagnosed as bilateral congenital blindness, with a diminished or absent electroretinogram (ERG) before the age of 6 m, and shows clinical and genetic heterogeneity [1,2]. ...
... Leber congenital amaurosis (LCA) is the earliest and most severe form of all inherited retinal degeneration (IRD), characterized by blindness or severe visual impairment from birth [1,2]. It is clinically diagnosed as bilateral congenital blindness, with a diminished or absent electroretinogram (ERG) before the age of 6 m, and shows clinical and genetic heterogeneity [1,2]. Recently, 14 causative genes of LCA were listed in the RetNet (Retinal Information Network) database [3]. ...
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Background: Leber congenital amaurosis (LCA) is the earliest onset and the most severe form of all inherited retinal degenerative disorders, characterized by blindness, or severe visual impairment from birth, and typically exhibits clinical and genetic heterogeneity. Recently, 14 causative genes of LCA were reported. We performed whole-exome sequencing (WES) for Japanese siblings, and identified a novel homozygous nonsense mutation in the RPGR-interacting protein 1 (RPGRIP1) gene. We also report their follow-up data over 27 years. Case presentation: Patient 1 is a 37-year-old male. In 1992, his eye position indicated orthophoria, however, horizontal nystagmus was evident, and he complained of photophobia. His best corrected decimal visual acuity (BCVA) was 0.2 (S + 6.5/C-3.5/170°) OD and 0.1 (S + 6.0/C-2.5/10°) OS. Fundus examination revealed bisymmetrical inferior focal retinal pigment epithelium (RPE) mottling. Bright-flash electroretinogram (ERG) revealed a subnormal pattern, while 30 Hz flicker ERG was non-recordable in both eyes. At his final visit in 2019, his BCVA was 0.09 (S + 3.5/C-3.5/180°) OD and 0.09 (S + 3.0/C-4.0/10°) OS. Patient 2, a 34-year-old female, is the sibling of patient 1. In 1992, her BCVA was 0.05 (S + 6.0) OD and 0.06 (S + 5.0) OS. She was in a chin-up position during visual acuity testing. Horizontal nystagmus was evident, and she also complained of photophobia. Bright-flash ERG was severely attenuated, and 30 Hz flicker ERG was non-recordable in both eyes. At her final visit in 2019, her BCVA was 0.02 (uncorrectable) OD and 0.03 (uncorrectable) OS. There were no other patients with LCA in their family and their parents were non-consanguineous. WES revealed a homozygous, consecutive, two-nucleotide variation in the RPGRIP1 gene (NM_020366: exon15:c.G2294A and c.C2295A, p.C765X), resulting in a premature stop codon. We interpreted this variation as a novel pathogenic mutation of RPGRIP1 that contributes to LCA6 development. Conclusions: Herein, we report a novel nonsense mutation of RPGRIP1 in two patients with LCA6 and present their long-term follow-up data. These clinical data linked to genotypes provide important information for the development of new treatments, such as gene therapy, as well as for genetic counseling.