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Characteristics of all head and neck squamous carcinoma (HNSCC) cell lines used in this pre-clinical study
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Background
Tumor hypoxia is associated with resistance to radiotherapy and chemotherapy. In head and neck squamous cell carcinoma (HNSCC), nimorazole, an oxygen mimic, combined with radiotherapy (RT) enabled to improve loco-regional control (LRC) in some patients with hypoxic tumors but it is unknown whether this holds also for radiochemotherapy (R...
Contexts in source publication
Context 1
... experiments were performed using 7-14 week-old male and female NMRI (nu/nu) mice obtained from the pathogen-free animal breeding facility (OncoRay-National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany). The experiments were performed using the HNSCC cell lines FaDu, SAS, UT-SCC-5 (UT5), UT-SCC-8 (UT8), CAL33, UT-SCC-45 (UT45) and SAT (Table 1 [ 26]), which have been previously described in detail [5,[27][28][29]. To immunosuppress the nude mice further, they received total body irradiation with 4 Gy (200 kV X-rays, 0.5 mm Cu-filter, ∼ 1 Gy/min) two to five days before tumor transplantation. ...Context 2
... genes belong to differentially expressed genes (DEG), p values corresponds to log-rank test and were not adjusted for multiple testing. Table S1. Start mean tumor volume and corresponding 95% confidence intervals for the seven different tumor models and their assigned treatment group. ...Context 3
... 0.001). 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 ...Citations
... The HNSCC xenograft models used in this work were part of a larger project on the effect of hypoxia with details of the animals and tumor models described in our pre-clinical study 36 . The animal facility and the experiments followed the ARRIVE guidelines and were approved according to the institutional guidelines and the German animal welfare regulations. ...
Mass spectrometry imaging (MSI) allows to study cancer’s intratumoral heterogeneity through spatially-resolved peptides, metabolites and lipids. Yet, in biomedical research MSI is rarely used for biomarker discovery. Besides its high dimensionality and multicollinearity, mass spectrometry (MS) technologies typically output mass-to-charge ratio values but not the biochemical compounds of interest. Our framework makes particularly low-abundant signals in MSI more accessible. We utilized convolutional autoencoders to aggregate features associated with tumor hypoxia, a parameter with significant spatial heterogeneity, in cancer xenograft models. We highlight that MSI captures these low-abundant signals and that autoencoders can preserve them in their latent space. The relevance of individual hyperparameters is demonstrated through ablation experiments, and the contribution from original features to latent features is unraveled. Complementing MSI with tandem MS from the same tumor model, multiple hypoxia-associated peptide candidates were derived. Compared to random forests alone, our autoencoder approach yielded more biologically relevant insights for biomarker discovery.
... Cal33 and FaDu xenografts were generated via subcutaneous transplantation of small pieces of tumors generated from a cryopreserved stock into the right hind leg of anesthetized NMRI (nu/nu) mice. Cisplatin (Calbiochem, Germany, 3 mg/kg b.w.) was dissolved in sodium chloride (0.9%) and administrated i.p. at the first day of treatment and then once weekly directly before irradiation as described by Koi et al. [22]. Control animals were injected with the same volume of sodium chloride. ...
Simple Summary
Cells with stem-like potential in head and neck squamous cell carcinoma (HNSCC) have been shown to exhibit features of intrinsic resistance to ionizing radiation. These cells, often referred to as cancer stem cells (CSCs), are characterized by an increased self-renewal and clonogenic potential, features associated with epithelial-to-mesenchymal transition (EMT), migratory behavior, and cellular plasticity. Cellular plasticity entails changes in phenotype and function in response to therapeutic pressures such as irradiation. Previously, we found that ALDH-positive CSCs are enriched in HNSCC cultures upon treatment with ionizing radiation. This process was characterized by mechanisms involving a selection of resistant populations and an induction of stem-like features. Cellular plasticity is regulated intracellularly through epigenetic mechanisms, including dynamic adaptations of DNA methylation and histone methylation, resulting in gene-specific alterations of expression levels. Therefore, we hypothesized that epigenetic targeting may prevent irradiation-induced cellular plasticity, rendering resistant HNSCC cells more sensitive. Employing a chemical library screen, we identified the histone demethylase inhibitor GSK-J1 to have a putative radiosensitizing effect that also reduces the stem-like potential of these cells.
Abstract
(1) Background: The sensitivity of head and neck squamous cell carcinoma (HNSCC) to ionizing radiation, among others, is determined by the number of cells with high clonogenic potential and stem-like features. These cellular characteristics are dynamically regulated in response to treatment and may lead to an enrichment of radioresistant cells with a cancer stem cell (CSC) phenotype. Epigenetic mechanisms, particularly DNA and histone methylation, are key regulators of gene-specific transcription and cellular plasticity. Therefore, we hypothesized that specific epigenetic targeting may prevent irradiation-induced plasticity and may sensitize HNSCC cells to radiotherapy. (2) Methods: We compared the DNA methylome and intracellular concentrations of tricarboxylic acid cycle metabolites in radioresistant FaDu and Cal33 cell lines with their parental controls, as well as aldehyde dehydrogenase (ALDH)-positive CSCs with negative controls. Moreover, we conducted a screen of a chemical library targeting enzymes involved in epigenetic regulation in combination with irradiation and analyzed the clonogenic potential, sphere formation, and DNA repair capacity to identify compounds with both radiosensitizing and CSC-targeting potential. (3) Results: We identified the histone demethylase inhibitor GSK-J1, which targets UTX (KDM6A) and JMJD3 (KDM6B), leading to increased H3K27 trimethylation, heterochromatin formation, and gene silencing. The clonogenic survival assay after siRNA-mediated knock-down of both genes radiosensitized Cal33 and SAS cell lines. Moreover, high KDM6A expression in tissue sections of patients with HNSCC was associated with improved locoregional control after primary (n = 137) and post-operative (n = 187) radio/chemotherapy. Conversely, high KDM6B expression was a prognostic factor for reduced overall survival. (4) Conclusions: Within this study, we investigated cellular and molecular mechanisms underlying irradiation-induced cellular plasticity, a key inducer of radioresistance, with a focus on epigenetic alterations. We identified UTX (KDM6A) as a putative prognostic and therapeutic target for HNSCC patients treated with radiotherapy.
