Fig 3 - uploaded by Alexey Solodovnikov
Content may be subject to copyright.
Carabus arcensis of the study area: The estimated population structure from the admixture cluster analysis of K = 2,3,.. .,10 clusters. Each vertical bar represents one individual and the colours indicate the likelihood of it belonging to a particular population given K populations. Dashed line represents the most likely number of clusters from each determining method (CV error and PCA clusters). [Colour figure can be viewed at wileyonlinelibrary.com] 

Carabus arcensis of the study area: The estimated population structure from the admixture cluster analysis of K = 2,3,.. .,10 clusters. Each vertical bar represents one individual and the colours indicate the likelihood of it belonging to a particular population given K populations. Dashed line represents the most likely number of clusters from each determining method (CV error and PCA clusters). [Colour figure can be viewed at wileyonlinelibrary.com] 

Source publication
Article
Full-text available
1. Larger carabid beetle species linked to open habitats have exhibited recent rapid decline in numbers throughout Europe. For example, Carabus arcensis is on the Danish Red List. 2. Ability of C. arcensis to disperse across non-habitable barriers in an island–mainland landscape has been evaluated through investigation of its population structure a...

Context in source publication

Context 1
... another split in the eastern cluster creating a North Denmark (TVE and BUN), East Denmark (TOF) and Sweden (SWE) subclusters. Higher K values showed the same general clustering, but with indistinguishable separation of individuals sampled within the north Danish cluster (TVE and BUN) and within the Laesø cluster (LAES-B, LAES-P and LAES-H) (Fig. 3). (Fig. 4). The three principal components (PCs) combined explained 19.1% of the total genetic variation (with PC1 explaining 9.4%, PC2 explaining 5.7% and PC3 explain- ing ...

Similar publications

Thesis
Full-text available
This thesis characterized spatial and temporal relationships of the soil microbial community, the nitrogen cycling microbial community, and a subset of the nitrogen cycling community with soil abiotic properties and plant growth stages in an unfertilized temperate grassland. Unfertilized perennial grasslands depend solely on soil-available nitrogen...
Article
Full-text available
This data article provides genome statistics, phylogenetic networks and trees for a phylogenetic study of Southern Hemisphere Buccinulidae marine snails [1]. We present alternative phylogenetic reconstructions using mitochondrial genomic and 45S nuclear ribosomal cassette DNA sequence data, as well as trees based on short-length DNA sequence data....
Preprint
Full-text available
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different loci subject to varying degrees of mutation, selection, and drift. Appropriately modelling this heterogeneity is important for reliable phylogenetic inference. One modelling approach in statistical phylogenetics is to apply independent models of molecu...

Citations

... C. arsensis can be a bioindicator of certain biotic and abiotic stress in forests [88]. However, due to climate change and habitat destruction, the species abundance is declining in Europe [89,90]. Our study revealed that treatment with Foray 76B may indirectly contribute to C. arcensis decline. ...
Article
Full-text available
Outbreaks of Lymantria monacha are of great concern, as their occurrence is predicted to become more intense and frequent due to a warming climate. A frequent treatment to control mass outbreaks of the pest is with the bioinsecticide Foray 76B. However, knowledge of how this treatment affects non-target insect species is limited. We surveyed the assemblages of non-target epigeal and arboreal insects in Pinus sylvestris forests in the year following bioinsecticide application. A collection of insects using sweep nets and pitfall traps was carried out in L. monacha-infested pine stands, (i) treated with Foray 76B and (ii) untreated, in three regions of Lithuania from May to October 2021. The results revealed that, in Neringa forests, species richness of the epigeal insects was lower in treated than in untreated sampling plots, with 36 and 41 different insect species, respectively. The relative abundance of epigeal Coleoptera in treated plots was 3.6%, while in untreated it was 53.2%. There was a significant decrease in the relative abundance of Carabus arcencis in Kapčiamiestis (by 7.4%) and Marcinkonys (by 16.7%). Treated plots were distinguished by lower relative abundance of arboreal Hymenoptera at all three study locations.
... Species of large, flightless carabids (Coleoptera: Carabidae) typically have poor dispersal abilities and slow life histories, so are especially vulnerable to the effects of habitat loss and fragmentation (Hansen et al., 2018;Keller et al., 2005;Völler et al., 2018). Furthermore, evidence suggests carabids may be important indicator species of habitat quality in their respective environments (Koivula, 2011). ...
Article
Full-text available
There is increasing concern into the decline of insect populations, with corresponding calls for conservation action aimed towards threatened species in particular. However, there is a distinct paucity of knowledge surrounding habitat requirements, microhabitat selection and conservation actions that may be undertaken for the vast majority of invertebrate species. Carabus intricatus (Coleoptera: Carabidae) Linnaeus, 1761 is a threatened ancient woodland specialist in the United Kingdom with a highly restricted distribution and is listed as a section 41 species of principal importance in England. Despite this, no empirical systematic evidence exists for even basic habitat requirements. Here, we used a patch‐occupancy modelling framework to determine occupancy and detection parameters for C . intricatus and a sympatric generalist species, C . problematicus , which is a potential competitor. Our models showed that decayed deadwood availability and leaf litter covering (an indicator of the availability of mature broadleaved trees) leads to higher occupancy of C . intricatus , whereas decayed dead wood availability and slug abundance are primary determinants of overall abundance. Additionally, detection models showed that higher humidity substantially increased activity of C . intricatus . For C . problematicus , ground moss coverage and overall deadwood volume most strongly influenced occupancy and abundance, whereas there were no humidity related influences on activity. The results support our general predictions about the specialist–generalist nature of the two species in the United Kingdom and indicate that key characteristics of old‐growth temperate rain forests, particularly the availability of deadwood and high humidity, are central to the conservation of these charismatic carabids.
... While forest cover has increased slightly, natural and seminatural open habitats have severely decreased because of intensification of agriculture and the spread of urban areas [1]. Heathland is one of the habitat types that have experienced the most severe decline, particularly in western Jutland [2,3]. This decline has naturally had dramatic effects on insect species dependent on heathland as their habitat. ...
... This decline has naturally had dramatic effects on insect species dependent on heathland as their habitat. Strong decline and genetic isolation have been documented for the beetle Carabus arcensis Herbst [2] and the butterfly Euphydryas aurinia (Rottemburg) [4,5], while the iconic and once widespread grasshopper Bryodemella tuberculata (Fabricius) went extinct in the 1940s [6]. However, widespread, open heathlands are not a natural habitat type in Denmark, and heathlands as we now know them are a direct result of Neolithic and Bronze-age agricultural practices, followed by moreor-less deliberate land management until the onset of the industrial and agricultural revolutions of the past two to three centuries [7]. ...
... Interestingly, Rasmussen et al. [72] showed that Danish populations of the European hedgehog Erinaceus europeaus Linnaeus are divided into three clusters: one on the major islands Funen, Zealand, Lolland, and Falster; one on the island of Bornholm in the far eastern part of the country; and one in the peninsula of Jutland with no separation across the Limfjord. In contrast to this, the marsh fritillary butterfly E. aurinia shows significant differentiation across the Limfjord [73], while in C. arcensis [2], the Limfjord acts as a more significant barrier in the western part of Jutland than in the east. ...
Article
Full-text available
Phengaris alcon is an endangered, ant-associated butterfly found, amongst other places, in Denmark, where it has undergone a severe decline during the last century. However, the population genetic consequences of this decline remain unknown. To explore past and current patterns in population structure in relation to the decline, we analyzed DNA microsatellite data from 184 recent and 272 historical P. alcon specimens from 44 spatiotemporal locations in Denmark. We thus generated the most temporally and spatially comprehensive population genetic dataset for P. alcon in Denmark so far. Our results for the Bayesian population assignment of recent samples revealed three major current genetic clusters: western Jutland, northern Jutland, and the island of Læsø. Estimates of genetic diversity showed signs of inbreeding in several extant populations. When including data from museum specimens, only a single locatSion showed a decline in heterozygosity between 1967 and 2021. We suggest that the two distinct clusters in western and northern Jutland indicate two temporally separated Holocene colonizations of Denmark, the latter of which may have been aided by changes in agricultural practice in the late Neolithic period. The unique genetic signature of the Læsø populations may be a result of the admixture of northern Jutland and western Swedish populations.
... In practice, this definition means that landscape genomic studies are those that would fit the definition of landscape genetics studies and use a relatively large number (typically >100) of genetic markers, distributed throughout an organism's genome. These may include older studies using AFLPs (e.g., Honnay et al. 2006;Chaput-Bardy et al. 2008;Watanabe et al. 2014) but more recently are dominated by analyses of hundreds to thousands of single nucleotide polymorphisms (SNPs) using a variety of approaches (targeted SNP genotyping (Fountain et al. 2018), sequencing of reduced representation libraries (Hansen et al. 2018), and whole genome re-sequencing (Waldvogel et al. 2018)). ...
Chapter
The composition and configuration of the landscape influence insect abundance, distribution, and diversity, with implications for the dynamics and spread of pests and disease vectors, as well as the persistence of threatened species. Here, we explore how genomic data have been used, within the spatially explicit frameworks provided by landscape genetics and genomics, to provide unique insights into how insects use and react to their surrounding landscapes. We review the literature on insect landscape genetics and genomics, identifying key trends and areas of application. We argue that the small size and short life span of most insects make them particularly well suited to exploring central issues of spatial and temporal scales in landscape genetics and genomics. We then present case studies demonstrating the power of landscape genomics approaches to provide novel insights into the ecological and evolutionary dynamics of insect pests, disease vectors, and pollinators of conservation concern.
... The most vulnerable species are those with restricted dispersal abilities which limit their responses to track habitat changes. For these species, ensuring landscape connectivity is critical to avoid decline and local extinction (Kokko & López-Sepulcre 2006;Iversen et al. 2017;Hansen et al. 2018). ...
... At the same time, ensuring good genetic diversity to maximize the adaptive potential of the reintroduced population is suggested. Since the rarity of G. bilineatus has been attributed to high turnover rate and anthropogenic destruction of freshwater habitats in Western Europe (Foster 1996;Foster & Bilton 2014) and since its dispersal ability is restricted (Iversen et al. 2017), conservation of this diving beetle should be aided by integrating habitat maintenance or restoration with landscape connectivity (Hansen et al. 2018;Knoblauch & Gander 2019). ...
Article
Full-text available
Graphoderus bilineatus is a predacious diving beetle, widely distributed across Europe. Its poor dispersal ability and the fragmentation and deterioration of its habitats have been indicated as the major causes of decline. In several western European countries, the species is extinct, justifying its inclusion as “vulnerable” in the IUCN red list. Aiming for the conservation of the last known population of G. bilineatus in the northern Italian region of Emilia Romagna, at the lake Pratignano, we surveyed its genetic diversity at the mitochondrial COI gene and compared it to that of other European populations. Two fixed COI haplotypes were found in the Italian and Austrian populations, respectively. Both haplotypes were unique among the European populations surveyed, suggesting these populations suffered a bottleneck and geographic isolation. Populations in western Europe showed lower genetic diversity and higher degree of differentiation than eastern populations. The uniqueness of Pratignano haplotype makes it difficult to choose a source population from which to transfer animals for a possible restocking. Selection of the source population should be based mainly on ecological considerations, but at the same time ensuring a good genetic diversity to maximize the adaptive potential.
... Life history traits can possibly explain passive dispersal over water by wind for small, flying insects, or by ocean currents in the case of halotolerant species (Hansen et al. 2018). In such cases, gene flow is likely still occurring across opposing shores of the Bering Strait, because relatively narrow sea gaps do not pose a barrier for dispersal of terrestrial insects living on or near those shores (Hansen et al. 2017). ...
Article
The recognition of Holarctic species, those shared between Nearctic and Palaearctic regions, often implies continuous or recent events of gene flow across the 85-km-wide Bering Strait between Alaska and Russia. During the Pleistocene (2.8–0.012 Mya), the Bering land bridge has provided frequent episodes of continuous, tundra habitat across this barrier, while the taiga forests of the northern hemisphere has been separated for much longer, at least 5.4 Mya. This more ancient divergence has led to allopatric speciation in nearly all forest-specialized organisms, including all tree species, and casts doubt on the taxonomic validity of the few subcortical beetle species that are considered to be Holarctic. Here we test the apparent Holarctic distribution of one such species, the morphologically variable rove beetle Quedionuchus plagiatus. Drawing upon morphological and molecular evidence, including morphometric analysis of male genitalia and phylogenetic and cluster analyses of DNA barcodes, we demonstrate that species-level diversity has been greatly underestimated in this lineage and conclude that none of its members are Holarctic. We propose complete allopatric divergence across Beringia in obligate forest beetles and discuss the role of biological constraints as barriers to Holarctic geneflow. We describe Quedionuchus caucasicus Brunke, sp. nov., Q. deceptor Brunke sp. nov., Quedionuchus gilaensis Brunke sp. nov., and Quedionuchus yunnanensis Brunke sp. nov.; revalidate Quedionuchus glaber (O. Müller) and Quedionuchus longipennis (Mannerheim); and propose the following: Quedius longipennis Mannerheim, 1846 = Quedius rufipennis Mäklin, 1853 syn. nov. (previous synonym of Q. plagiatus Mannerheim); Staphylinus glaber O. Müller, 1776 = Quedius planatus Sharp, 1884 syn. nov.
... This could signify that the European cluster is more ancient, but more interbreeding within the European populations has taken place, while the Caucasian population has been more isolated. The low amount of variation between specimens from island populations (Anholt and Møn) could indicate recent colonization events, as seen for the Carabid beetle Carabus arcensis on other Danish islands(Hansen, Justesen, Olsen, & Solodovnikov, 2017), but could also be a sign of inbreeding or an evolutionary sweep.The existence of contemporary Nordic populations of cold-hardy species is normally explained by colonization after the last ice age from southern, western, and/or eastern refugia. However, recent studies suggest that in situ or close-by survival of at least some insect and plant species was possible during the last ice age(Quinzin, Normand, Dellicour, Svenning, & Mardulyn, 2017;Simonsen & Huemer, 2014). ...
Article
Full-text available
Northern and mountainous ice sheets have expanded and contracted many times due to ice ages. Consequently, temperate species have been confined to refugia during the glacial periods wherefrom they have recolonized warming northern habitats between ice ages. In this study, we compare the gene CYP405A2 between different populations of the common burnet moth Zygaena filipendulae from across the Western Palearctic region to illuminate the colonization history of this species. These data show two major clusters of Z. filipendulae populations possibly reflecting two different refugial populations during the last ice age. The two types of Z. filipendulae only co‐occur in Denmark, Sweden, and Scotland indicating that Northern Europe comprise the hybridization zone where individuals from two different refugia met after the last ice age. Bayesian phylogeographic and ecological clustering analyses show that one cluster probably derives from an Alpe Maritime refugium in Southern France with ancestral expansive tendencies to the British Isles in the west, touching Northern Europe up to Denmark and Sweden, and extending throughout Central Europe into the Balkans, the Peleponnes, and South East Europe. The second cluster encompasses East Anatolia as the source area, from where multiple independent dispersal events to Armenia, to the Alborz mountains in north‐western Iran, and to the Zagros mountains in western Iran are suggested. Consequently, the classical theory of refugia for European temperate species in the Iberian, Italian, and Balkan peninsulas does not fit with the data from Z. filipendulae populations, which instead support more Northerly, mountainous refugia.
Article
Full-text available
Knowledge of patterns of genetic diversity in populations of threatened species is vital for their effective conservation. However, destructive sampling should be avoided in threatened species so as not to additionally increase the risk of local population extinction. We exclusively used beetle remains and beetles collected after death to analyze local and regional patterns of genetic variation in the endangered flightless longhorn beetle Iberodorcadion fuliginator in the border region of Switzerland, France and Germany, in grassland remnants. We extracted DNA from the beetles’ remains and genotyped 243 individuals at 6 microsatellite loci. We found moderate genetic differentiation between populations, each belonging to one of two metapopulations situated on either side of the river Rhine, but distinct genetic differentiation between populations across metapopulation The genetic distance between populations was correlated with the geographic distance between the sites sampled. Genetic structure analysis inferred the presence of two genetic clusters. The populations in the Alsace (France) represent one cluster, together with the Swiss populations near Basel, which is separated by the river Rhine from the cluster composed of the populations in southwestern Germany. Thus, the historical separation by the river Rhine surpasses more recent effects of human-induced habitat fragmentation on the genetic differentiation in I. fuliginator.
Article
Full-text available
Rove beetles (Staphylinidae) are used to explore the forces that shaped the terrestrial fauna on Læsø, a young ca. 3000 year old Danish oceanic island located in the Kattegat strait between mainland Denmark and Sweden. We compile a detailed list of species of rove beetles for Læsø (328 species) and the surrounding Danish and Swedish regions (altogether 1075 species), which includes a standardized inventory of their body sizes, and the habitat and microhabitat preference of each species. The composition of the fauna on Læsø and adjacent mainland regions points to North-Eastern Jutland as the main source of the rove beetles on Læsø. Although large beetles are more active and likely to disperse than small beetles, there is no bias towards large species on the island indicating that the sea separating Læsø from the mainland has not been a barrier for rove beetle dispersal. The statistical analysis of the habitat and microhabitat preferences of the species of the entire system studied has shown that Læsø, compared to the mainland areas, is distinctly more dominated by ecological generalists, especially by species adapted to ephemeral, temporary humid microhabitats. Presumably, the mosaic of mostly dry open habitats available on Læsø fi lters for species, that are able to populate these suboptimal habitats via patches of humid but ephemeral microhabitats. A comprehensive eco-faunistic dataset for the Staphylinidae compiled for this study is the first modern account of the rove beetle fauna on the Danish island of Læsø.